Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g05068 ATGCAAGTCCATTATTGTTCAAGTTCATATCATTCTGACAAGTGCAAGTTTTCACATGATACAGTTCCTAAAACAAAATCAAAGCCATGTACTTTCTTTGCTCGTGGAACTTGCTTAAAAGGGGATGCTTGCCCTTATGATCATCACCTCTCCAAGTATCCTTGTTATAATTTTGTGTCCACTGGCTCTTGTGGCAGAGGTGATGCCTGTATGTTTTCACACCAGGTACCAGCCAACCAAGTTACTCCTGGGCCTTCAAATATTTCCAAACCAGAGTTGAACTCTCCACTCATGTCAGGAAATACAAATTTCAGTGTACCACATAACAATAATGGCTGTAGTTCTGTCCAACAAAACCATTTGACCAATTCTAACAATTATGAACTTGTCAGGAAGCAATTTTGTCAAAACGCCCCAATTATGCAGCAAGTAAGTTTGGTTTACCGTACTCGTACTCCTGCCTTAAGAGTCATCCTTATCAGATCACCTGAAAATATGGGTTTCAAGTATTTGTTGATTGTGATGTGTCTGTTGGCTTGGTTTGGATCCTTGACTTATGCAACTTCTGATGATGGGTTAATGAGAATTAGTCTAAAAAAGAGGAGTTTAGACATTAACAGTCTCAGTTCTGCAAGGATCAAGGTGGCTGTTCATCATAGAGGTTTAGGGAGCGTTAATAAGAATCATTTGAAAACAGATGTGGTGTATCTAAAGAATTATCTTGATGCACAATATTATGGAGAAATTGGTATTGGGTCACCTCCACAAAACTTCAAAGTTGTGTTTGACACAGGAAGCTCCAATCTTTGGGTCCCTTCTTCAAAATGCATCTTGTCTATTGCCTGCTATATTCATTCCAAGTATAGGTCAAAGCTGTCTAGCACCTATAAGAAAATAGGAACACCTTGCAAAATCCCTTTTGGCCGTGGACACATTCCTGGCTTCTTCAGCCAAGATAATGTAAAAGTTGGGAATATCATCATCAAAGAACAGGAATTTGCTGAGATAACAAAGGAAGCATCTTTGGCATTTTTAGCAATGCATTTTGATGGGGTACTTGGACTTGGATTCCAGGATATTGCAGTTGGAAATGTCGCATCAGTGTGGTATAATATGATGGAACAAGGGCACATGGCTCAAAAAATTTTCTCTCTTTGGCTAAACCCAGACCCAATGGCAAAGATAGGGGGTGAGATTGTCTTTGGTGGTATTGACTGGAAGCACTTTAGGGGTGACCATACTTACGTTCCAATTTCTCAAAAAGGTTATTGGCAGATTGAGGTGGGAGATATTGTACTTGCAAACAATTCAACAGGTCTATGTGAGGGTGGCTGTTCTGCCATTATTGACTCAGGGACATCTTTAATTGCTGGTCCAACAAGTGTTGTGACTCAAATTAACCATGCCATTGGAGCAGAAGGGTATGTGAGTTTTGAATGTAAAAACATCATCCATACCTATGGAGATTCCATATGGGAATTCTTAACTTCTGGGTTAAGACCTGAAATTATATGCGTTGACATTGGACTCTGCTCACGCAATGGAACACATAAAATAAATGATGTTATTGAAACAGTGGTACATAATGAAAGTAGGGGTGAGTCAAGAACCAGGGAGAGCCCCTTGTGTACTTTCTGTGATATGATTGTCTTATGGATTCAAGTTCAGCTTAAGCAAAGGAATACAAAGGAAAAAATATTAAAATATGTGGATGAGCTGTGTGAGAAGCTTCCCAATCCCGTGGGACAATCATTCATAGATTGTGATAGTATTGTAACTATGCCACAAATTACATTCAATATAGGAAACAAATCATTTCCTCTCTCTCCAGAACAGTATATCCAAAGAGTTGAAGAAGGTTGCTCTACTGTTTGCTATGGTGGTTTTGTTACTCTAGACGTGCCTCCTCCACAGGGTCCCCTATGGGTTCTTGGAGATATTTTTCTGGGAGCATATCATACAGTTTTTGACTATGGCAATCTCAGGATAGGATTTGCTGAAGCTGCATAG 2010 0.3955 MQVHYCSSSYHSDKCKFSHDTVPKTKSKPCTFFARGTCLKGDACPYDHHLSKYPCYNFVSTGSCGRGDACMFSHQVPANQVTPGPSNISKPELNSPLMSGNTNFSVPHNNNGCSSVQQNHLTNSNNYELVRKQFCQNAPIMQQVSLVYRTRTPALRVILIRSPENMGFKYLLIVMCLLAWFGSLTYATSDDGLMRISLKKRSLDINSLSSARIKVAVHHRGLGSVNKNHLKTDVVYLKNYLDAQYYGEIGIGSPPQNFKVVFDTGSSNLWVPSSKCILSIACYIHSKYRSKLSSTYKKIGTPCKIPFGRGHIPGFFSQDNVKVGNIIIKEQEFAEITKEASLAFLAMHFDGVLGLGFQDIAVGNVASVWYNMMEQGHMAQKIFSLWLNPDPMAKIGGEIVFGGIDWKHFRGDHTYVPISQKGYWQIEVGDIVLANNSTGLCEGGCSAIIDSGTSLIAGPTSVVTQINHAIGAEGYVSFECKNIIHTYGDSIWEFLTSGLRPEIICVDIGLCSRNGTHKINDVIETVVHNESRGESRTRESPLCTFCDMIVLWIQVQLKQRNTKEKILKYVDELCEKLPNPVGQSFIDCDSIVTMPQITFNIGNKSFPLSPEQYIQRVEEGCSTVCYGGFVTLDVPPPQGPLWVLGDIFLGAYHTVFDYGNLRIGFAEAA* 670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g05068 669 ProSiteProfiles Saposin B type domain profile. 475 515 IPR008139 -
Rops2g05068 669 SMART c3hfinal6 52 76 IPR000571 GO:0046872
Rops2g05068 669 SMART c3hfinal6 24 50 IPR000571 GO:0046872
Rops2g05068 669 Gene3D Acid Proteases 194 403 IPR021109 -
Rops2g05068 669 Pfam Saposin-like type B, region 1 541 578 IPR007856 GO:0006629
Rops2g05068 669 Gene3D - 21 87 - -
Rops2g05068 669 ProSiteProfiles Saposin B type domain profile. 539 625 IPR008139 -
Rops2g05068 669 PRINTS Pepsin (A1) aspartic protease family signature 642 657 IPR001461 GO:0004190|GO:0006508
Rops2g05068 669 PRINTS Pepsin (A1) aspartic protease family signature 397 410 IPR001461 GO:0004190|GO:0006508
Rops2g05068 669 PRINTS Pepsin (A1) aspartic protease family signature 447 458 IPR001461 GO:0004190|GO:0006508
Rops2g05068 669 PRINTS Pepsin (A1) aspartic protease family signature 251 271 IPR001461 GO:0004190|GO:0006508
Rops2g05068 669 FunFam Lysosomal aspartic protease 231 473 - -
Rops2g05068 669 Pfam Saposin-like type B, region 2 479 511 IPR008138 -
Rops2g05068 669 ProSiteProfiles Peptidase family A1 domain profile. 245 666 IPR033121 -
Rops2g05068 669 ProSiteProfiles Zinc finger C3H1-type profile. 54 77 IPR000571 GO:0046872
Rops2g05068 669 ProSiteProfiles Zinc finger C3H1-type profile. 24 51 IPR000571 GO:0046872
Rops2g05068 669 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 447 458 IPR001969 GO:0004190|GO:0006508
Rops2g05068 669 PANTHER BETA-SITE APP-CLEAVING ENZYME, ISOFORM A-RELATED 177 667 IPR001461 GO:0004190|GO:0006508
Rops2g05068 669 Pfam Eukaryotic aspartyl protease 244 668 IPR033121 -
Rops2g05068 669 SUPERFAMILY CCCH zinc finger 53 76 IPR036855 GO:0046872
Rops2g05068 669 SUPERFAMILY Saposin 477 578 IPR011001 -
Rops2g05068 669 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 260 271 IPR001969 GO:0004190|GO:0006508
Rops2g05068 669 SUPERFAMILY CCCH zinc finger 25 49 IPR036855 GO:0046872
Rops2g05068 669 SUPERFAMILY Acid proteases 173 668 IPR021109 -
Rops2g05068 669 Gene3D - 475 578 - -
Rops2g05068 669 Gene3D Acid Proteases 404 669 IPR021109 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g05068 Rops-Chr2 90859784 90866496 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Rops2g05068 Asp 6.6e-116 CL0129
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g05068 K08245 - gmx:100793160 861.677