Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g05063 ATGGGAACATTAGACCAAATTGATGCTCATCAAACTCAGTCATCGTCATCTTCATCCTCTTCTATTGATAGCAACAACCACCCTTCTGTGACACCTGCAGCTTCTCGTTCCTCTTCATCTTTGTGCCTCTCAAGTGTCTGCAGAAATAGTAGCAGAAGAAACAGAACAGATTTGAGCACTGACTTGAGACTAGGTCTTAGCATCTCTCCTTCTCAATCTGATTTAGCATTCAATTCAACACCAAGGGAAGAAACTTTTGATTGGCCACCAATTAAGTCCATATTGAGGAGCACCCTTGTGGAGAAACAAAACCATTTGAGCCAAAGACCCTCTTTATTTGTCAAAGTCTATATGGAAGGAATCCCAATAGGTAGAAAATTAAATCTGTTGGCACATCATGGCTATGATGGACTTGTAAAAGCTCTTGGCCATATGTTTAGGACCATCATTCTCTGTCCTAACTCTCAACCATTTAATTCTGGGAATTTTCACGTGCTAACTTATGAGGATCAAGAAGGGGATTGGATGATGGTTGGAGATGTGCCATGGGAGATGTTCTTGACCAGTGTGAAGAGGCTGAAGATCACAAGAGCTGACAGATGCTAG 606 0.4175 MGTLDQIDAHQTQSSSSSSSSIDSNNHPSVTPAASRSSSSLCLSSVCRNSSRRNRTDLSTDLRLGLSISPSQSDLAFNSTPREETFDWPPIKSILRSTLVEKQNHLSQRPSLFVKVYMEGIPIGRKLNLLAHHGYDGLVKALGHMFRTIILCPNSQPFNSGNFHVLTYEDQEGDWMMVGDVPWEMFLTSVKRLKITRADRC* 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g05063 201 Gene3D - 105 201 - -
Rops2g05063 201 ProSiteProfiles PB1 domain profile. 111 200 IPR000270 GO:0005515
Rops2g05063 201 MobiDBLite consensus disorder prediction 1 36 - -
Rops2g05063 201 SUPERFAMILY CAD & PB1 domains 105 195 - -
Rops2g05063 201 Pfam AUX/IAA family 20 197 IPR033389 -
Rops2g05063 201 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 58 199 IPR003311 GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g05063 Rops-Chr2 90789026 90790632 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g05063 115 195 B3 DNA Binding Superfamily AT4G23980 37.037 1.33e-10 58.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Rops2g05063 AUX_IAA 8.1e-34 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g05063 K14484 - gmx:100818083 308.916
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g05063 2 90789026 90790632 Rops2g05063 2 90789026 90790632 ECH