Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g05060 ATGGAAGGCAAAGCTGCTCTGAAAAATTTACTGCAACTTCGGGAAAGGCTATGTGATAATAATACAGATGCACTAAACGGGACAGAGGAACACTTGAATAAAAATATTCTAGGATCTACTTTTCTCAGTTTGAACCTGAATAACTCAGAGCCTCCCCAAAATCAAGAGCAGCCCCTGACCCAATTGGGCTTGCTGCAAACTAAGTTAGAGGAGGTGAAGATGGAGAATCAGAATTTAAGATCTATGCTAAATCAGATTACTGAACACTTCGCAGCTCTTGAGAATCAGTTATTGTTGGCGATGCAGCGGCAGCAACTACGTTCATCACATCAAAACAATGATAACCTGCAGAAGGACAACCGGCATGATGACATGGAGAAATCAGTGTTACCCCCTCGGCAGCTCTTAAATACAGGTAAAATCAATAAACACATAGCATCACAAGAAGCAAAGATCATAGAAGAAGCATCTTGTAGGAAAGCTAGAGTGTCCATAAGGGCAAGATCAGATTTCTCTTTGATGGGCGATGGATGTCGGTGGAGAAAGTATGGACAAAAGATAGCAAAGAGTAACCCTTGTCCCCGGGCCTACTATCGTTGCAACTTGGGAACTGCATGCCCAGTTCGTAAGCAGGTTCAAAGGTGTTCTGTGGATGAGACTGTTTTCATCACAACCTATGAGGGGAATCATAATCATTCTCTCCCACCAGAAGCAAGATCCATGGCAAGCTCAACATCAGCAGCATTGAACATGTTCCTTTCTGGCTCAACCACTAGTTTACATAGCAGCACTCTATCAAACTCAGGCCTCTTCTCTTCATCATCTACTCCTGCCTCCACTGGCTTGGCTACCTTCTACCCTTCTGCATCATGTCCCACTGTAACATTGGACTTAACCCAGCCCTCTAATAACCACTTGAAATTCCAAAGTGCTATTTCTTCAAACTATGGGCAACCATTTTCTCCTTCAATGGATGGTTATACTCCACAATCTGAGGGATTTTACTTGTCTTCTAAGCTTCCAACCATGATACCCTCAGATAAAAACATTGACTTGGTCGATGTTATTAGTGCAGCTATAATCAAGGATCCTTCTATTAAGGCAAAATTAGAGGCAGCTGTTTCATCACTCATTGGAGACACTGCGAACAAACATCAATAA 1161 0.4255 MEGKAALKNLLQLRERLCDNNTDALNGTEEHLNKNILGSTFLSLNLNNSEPPQNQEQPLTQLGLLQTKLEEVKMENQNLRSMLNQITEHFAALENQLLLAMQRQQLRSSHQNNDNLQKDNRHDDMEKSVLPPRQLLNTGKINKHIASQEAKIIEEASCRKARVSIRARSDFSLMGDGCRWRKYGQKIAKSNPCPRAYYRCNLGTACPVRKQVQRCSVDETVFITTYEGNHNHSLPPEARSMASSTSAALNMFLSGSTTSLHSSTLSNSGLFSSSSTPASTGLATFYPSASCPTVTLDLTQPSNNHLKFQSAISSNYGQPFSPSMDGYTPQSEGFYLSSKLPTMIPSDKNIDLVDVISAAIIKDPSIKAKLEAAVSSLIGDTANKHQ* 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g05060 386 Coils Coil 99 119 - -
Rops2g05060 386 Pfam WRKY DNA -binding domain 176 232 IPR003657 GO:0003700|GO:0006355|GO:0043565
Rops2g05060 386 Gene3D WRKY domain 158 236 IPR036576 GO:0003700|GO:0006355|GO:0043565
Rops2g05060 386 ProSiteProfiles WRKY domain profile. 169 235 IPR003657 GO:0003700|GO:0006355|GO:0043565
Rops2g05060 386 Coils Coil 62 96 - -
Rops2g05060 386 SUPERFAMILY WRKY DNA-binding domain 167 235 IPR036576 GO:0003700|GO:0006355|GO:0043565
Rops2g05060 386 SMART WRKY_cls 174 234 IPR003657 GO:0003700|GO:0006355|GO:0043565
Rops2g05060 386 MobiDBLite consensus disorder prediction 106 127 - -
Rops2g05060 386 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 50 381 IPR044810 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g05060 Rops-Chr2 90720031 90727083 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g05060 65 300 WRKY Transcription Factor Family AT4G04450 40.584 1.22e-65 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Rops2g05060 WRKY 1.1e-21 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g05060 - - gmx:100779314 450.669
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops11g01927 11 31124768 31132328 Rops2g05060 2 90720031 90727083 PCT