Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g05055 ATGGAAGCGGAAGATGATTGGGACTTGAGCGCAGTCGACCTCGATTCCCTCGAGAGAGACGCTTTCCAGAAGATTGCTCAACTACGCCATTCTTCTTCTTCTGCTTCTCAGCAACCCCATCCCGCAACCAACCACTTCCCACCAAACCCTCTTCTTGATTCACGTCCTCAAAGAGTTGAGGCTTTGTCTCAAGGAGCTAGAGCACTACCCACGTCATTGAAATCAGGGACAACAAACAACGATGAACATTTGAAAGAACTGCCAAAGATTTCTGTCAAATTGTTTCTTCATTCCAGTGGAAATGTTGCGGCAAAGTTTCAATATGACCAGGTAGTAGTTGCTGCTTTTCGGAGAATCCCAAAATCTACTTGGAATGCAAAAGAACGGTTATGGATGTTCCCACTCTCTTCTTTGTCAGAAGCAGAAAAGGTTCTTGGAGAAATATCTGGTTATAATGTTCAGATAGAGAACTTAGATCCCTTAGTGCAACGGGTCATTACTGCTGCATCTGCTGTTCCTGATCTTCGAGATCGATACGACAAGATCCCCAGCTATATTGAATCAAAGCTTTTACCATTTCAGCGAGAAGGTGTAAGGTTTATATTGCAACATGGAGGGCGTGCCCTTTTAGCTGATGAAATGGGACTGGGTAAAACTTTGCAGGCCATTGCTGTTGCTGCATGCGTTCAGGACTCATGGCCTGTTCTCATACTTGCTCCATCTTCATTACGCTTGCAATGGGCTTCTATGATTCAACAATGGCTGAATATTCCTTCATCAGATATATGTATTGTCTTGTCTCAAAGTGGTGGATCAAACAGAGGAGGTTTTAATATATTATCTTCAAGTGCCAAAAGCAGCATTCATCTAGATGGACTATTCAACATTATCTCATATGATTTGGTGCCAAAGATACAGAATATGCTCATAGCATCTGACTTTAAGGTTGTAATTGCTGATGAATCACACTTTCTGAAAAATGCTCAGGCAAAGAGGACAACTGCTTCTCTTCCAGTTATAAAGAAAGCTCAATATGCAATATTGCTTAGTGGAACTCCCGCATTATCCCGACCAATTGAACTATTTAAGCAGCTGGAAGCTCTGTATCCTGATGTATATAAGAATGTTCATGAATATGGTAACCGATATTGCAAGGGTGGAATTTTTGGAGTCTATCAAGGTGCAAGTAACCATGAAGAATTGCACAATTTGATGAAGGCAACCGTGATGATTCGCAGGCTTAAAAAGGATGTTCTTTCTCAACTTCCTGTAAAGCGTAGGCAACAAGTCTTCCTCGACTTGGCTGACAAGGACATGAAGCAAATTAATGCTTTATTTCGTGAGTTAGAGAGGGTAAAAGCCAAAATTAAGGCATCTAGCTCAAAAGAGGAGGCTGAATCACTCAAGTTTGCTCAAAAAAATCTTATCAACAAGATATATACTGATTCTGCTGAAGCCAAGATTCCATCTGTTCTTGATTATGTTGGGACTGTCATTGAGGCAGGTTGCAAGTTTCTTATATTTGCACACCATAAACCAATGATTGATTCGATACATGAGTTTCTTCTTAAGAAAAAAGTGGGTTGTATCCGGATTGATGGAAGTACACCCGCTGCAACAAGGCAACAGTTGGTTACAGAGTTTCAGGAAAAAGATGCTATCAAGGCAGCAGTGCTATCTATTAAAGCTGGAGGCGTTGGGTTAACTTTAACTGCTGCCAGCACCGTCATCTTTGCTGAATTGTCTTGGACTCCAGGTGACCTAATACAGGCTGAAGACCGTGTTCATAGAATTGGCCAGGTGTCTTCAGTAAATATACACTACTTGCTAGCAAATGACACAGTTGATGACATCATATGGGACGTAGTGCAAAGCAAACTGGAAAATTTGGGGCAGATGCTAGATGGCCATGAGAACACCTTAGAGGTCTCGGCTAGTCGGCCAGAGAACAGCCCTGCAAAGCAGAAAACACTTGACCAAACATGCACAATGTTGCATCGATATCATTGTCCAGAAGCTTCCCTATCATACTTCTTTGGAATTTTGACAGCTGGTGCTCAAAGTGGAGGTGATCGCATATTGGCACTCTTGCTCATCCCACAAGAAGGGCTTGTAAAGCAGAGGGTGTAG 2130 0.4221 MEAEDDWDLSAVDLDSLERDAFQKIAQLRHSSSSASQQPHPATNHFPPNPLLDSRPQRVEALSQGARALPTSLKSGTTNNDEHLKELPKISVKLFLHSSGNVAAKFQYDQVVVAAFRRIPKSTWNAKERLWMFPLSSLSEAEKVLGEISGYNVQIENLDPLVQRVITAASAVPDLRDRYDKIPSYIESKLLPFQREGVRFILQHGGRALLADEMGLGKTLQAIAVAACVQDSWPVLILAPSSLRLQWASMIQQWLNIPSSDICIVLSQSGGSNRGGFNILSSSAKSSIHLDGLFNIISYDLVPKIQNMLIASDFKVVIADESHFLKNAQAKRTTASLPVIKKAQYAILLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGIFGVYQGASNHEELHNLMKATVMIRRLKKDVLSQLPVKRRQQVFLDLADKDMKQINALFRELERVKAKIKASSSKEEAESLKFAQKNLINKIYTDSAEAKIPSVLDYVGTVIEAGCKFLIFAHHKPMIDSIHEFLLKKKVGCIRIDGSTPAATRQQLVTEFQEKDAIKAAVLSIKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRVHRIGQVSSVNIHYLLANDTVDDIIWDVVQSKLENLGQMLDGHENTLEVSASRPENSPAKQKTLDQTCTMLHRYHCPEASLSYFFGILTAGAQSGGDRILALLLIPQEGLVKQRV* 710
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g05055 709 SMART helicmild6 516 599 IPR001650 -
Rops2g05055 709 Pfam Helicase conserved C-terminal domain 500 599 IPR001650 -
Rops2g05055 709 Gene3D - 166 419 IPR038718 -
Rops2g05055 709 FunFam Chromatin remodeling factor18 448 672 - -
Rops2g05055 709 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 490 642 IPR001650 -
Rops2g05055 709 MobiDBLite consensus disorder prediction 26 42 - -
Rops2g05055 709 Gene3D - 448 675 IPR027417 -
Rops2g05055 709 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 199 371 IPR014001 -
Rops2g05055 709 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 312 642 IPR027417 -
Rops2g05055 709 MobiDBLite consensus disorder prediction 26 54 - -
Rops2g05055 709 CDD SF2_C_SNF 486 610 - -
Rops2g05055 709 CDD DEXHc_HARP_SMARCAL1 190 413 - -
Rops2g05055 709 ProSiteProfiles HARP domain profile. 86 160 IPR010003 -
Rops2g05055 709 SMART ultradead3 186 379 IPR014001 -
Rops2g05055 709 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 158 413 IPR027417 -
Rops2g05055 709 Coils Coil 432 462 - -
Rops2g05055 709 PANTHER DNA ANNEALING HELICASE AND ENDONUCLEASE ZRANB3 FAMILY MEMBER 4 650 - -
Rops2g05055 709 Pfam SNF2-related domain 208 468 IPR000330 GO:0005524|GO:0140658
Rops2g05055 709 FunFam Chromatin remodeling factor18 163 437 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g05055 Rops-Chr2 90651733 90667019 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g05055 486 649 RAD5 or RAD16-like Gene Family AT5G22750 30.488 5.69e-17 83.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Rops2g05055 SNF2_N 5.6e-28 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g05055 K14440 - gmx:100797654 1137.09
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g05055 2 90651733 90667019 Rops2g05055 2 90651733 90667019 ECH