Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g05052 ATGCAGTTGTTATCGACGAAGAGGCCTGCCAACTTTGGGCCAAGGAGCCCTTTTGCAATTGTTATCGGCAAATGCCAACTAGTTTCCATCAATCTTATAGTTTTCTTTCCTTCATTCTCCTGTTGCTTTGTAGTGCTACTTTGCCATCATTCTGAAAAGGCTGGAAGCAACCTCAAGTTTGCAAAAAGCATTTGTTTTCTAGTGGTGTCTGTAAGTTGTAACCAACAGAGGTTTTTCTTGGGGAAAATGGTGGCTGAGGCCAAATTGGATGGAGATATTACTTCAGCTGAGATGACAGGATCAACAAGTCATCCACCAGTTCTAGGCCCTGAAAATACTCAAGAAATGGATGGCAAGCAGCAGGATTCCAAGAAGAACAAGGAGAAGGACCAAAGCAACAAAACAGTACCCTTTTACAAGCTTTTTTCATTTGCAGACTCTTGGGATTATCTGCTGATGTTTGTTGGGACAATAAGTGCTGTTGGTAATGGAATCTCTATGCCTTTAATGATCATCATTATTGGTGATACAATTGATGCTTTTGGAGGAAACGCTGACACTACACTAATAGTTCATGAAGTTTCCAAGGTGTCTGTGAAGTTTGCATTCATGGGTGCAGGAACCTTTTTTGTAGCGTTTTTACAGGTGGCTTGCTGGGTGATCACAGGGGAGAGACAAGCTGCAAGAATAAGAGCTTTATATCTCAAAGCAATTTTGAGGCAAGATATCGGTTTCTTTGACAAGGAAACAAATAGTGGTGAAGTTGTTGGAAGGATGTCAGGTGACACAGTTCTTATTCAAGATGCCATGGGTGAGAAGGTAGGAAAATTCACACAGTATGTGGCATCTTGTTTAGGAGGTTTAGTAGTAGCATTCATCAAGGGTTGGCTTCTAACCCTTGTCCTTCTATCTTCTCTGCCACTTCTTGTCCTCTCCGGTTCTTTTATGAGTTATGCTTTTGCAAAGATGGCATCCCGTGGACAAGCAGCTTATTCTGAAGCAGCAACTATAGTAGAACAAACAATTGGTTCAATCCGAACTGTTGCATCATTTACTGGGGAGAAGCAAGCTATAGCTCGATACAATCAATCCTTAACTAAAGCTTATAGAACTGGAGTGCAAGAGGGAGTGGCTGCTGGTTTAGGCCTTGGTTCTGTTCGTTTATTTGTTTACTGCAGTTATGCTTTGGCTGTATGGTTTGGTGGGAAGATGGTACTAGAGAAAGGTTATACAGGAGGTGAAGTCATGAGTATATTTTTTGCAGTACTAACTGGTTCCTTGTCTCTGGGGCAGGCATCTCCAAGCTTAACTGCATTTGCTGCAGGACAAGCTGCTGCCTTTAAAATGTTTGAGACAATAAAGAGGCAGCCAGATATTGATGCTTATGAAACTGTTGGTCGTCAGCTAGATGATATTTCTGGAGATATAGAATTTAGGGAGGTTTGCTTTAGTTATCCTTCAAGACCAGATGAACTGATATTCAATGGATTTTCTATTTCAATATCAAGTGGCACTACTGCAGCTCTGGTAGGGCAAAGTGGGAGCGGGAAATCAACAGTTATTAGTTTGATAGAGAGGTTTTATGATCCACAAGCTGGTGAAGTTCTCATTGACGGTATCAACCTCAGAGAATTTCAACTGAAATGGATCAGACAGAAAATAGGCCTAGTCAGCCAGGAACCGATTCTCTTTACTTGTAGCATTAAAGAGAACATTGCCTATGGCAAGGATGGGGCAACAGATGAAGAAATCAGAGCTGCAGCGGAGCTTGCTAATGCTTCTAAATTCATAGATAAATTTCCCTATGGACTTGACACGATGGTCGGTGAGCATGGAACTCAGCTTTCTGGAGGTCAAAAGCAAAGAATTGCGATAGCTAGAGCAATTCTGAAAGATCCAAGAATTCTACTCCTTGATGAAGCTACAAGTGCCCTTGATGCAGAGTCTGAAAGGGTGGTACAAGAGACACTAGACAGAATTATGATCAACCGAACAACTATCATCGTAGCACACCGCCTAAGCACAATAAGGAATGCTGATATCATTGCCGTTATTCACCAAGGAAAAGTAGTAGAAAAAGGTACACATGCTGAGCTCACTAAAGATCCTGATGGAGCTTATAGCCAGCTCATTAGATTGCAAGAAATTAAAAAGGATTCAGAGCAACATGGTGCAAATGAAAACTATGTAGATTCAAGCCAACGGTCTTTAAGCCGGGGATCATCTGGAATTGGAAACAGCAGTCATAACTCATTCAGAATATCAAATGCTACCATGGAAACATCAGAAGGAGGGCCTGAAGATCTTCCTTCAGCAGCATCACATACACCTCTAGATGTCCCACTTCTTCGCCTTGCTTATCTTAACAAGCCTGAAATCCCAGTGTTACTCATAGGGACTCTAGCAGCAGCAGTAACTGGGGCAATACTACCCATTATGGGACTTCTTGTCTCCAAAATGATAAATACTTTCTTTGAGCCTGCAGATGAACTCCGTAGAGACTCAAAGTTTTATGCATTAATATTTGTTGCCCTTAGCTTGGGTTCCTTCTTGTTTCATCCATTGAGGTCCTACTTTTTTTCTGTAGCTGGTTCTAAGTTAATAAAAAGGATCCGGATAATGTGTTTTGAGAAAATAATTCACATGGAAGTAGGCTGGTTCGATAAAGGTGAGCATTCAAGTGGAGCACTTGGAGCAAGGCTGTCAACAGATGCTGCTTCTATTCGAACTTTGGTTGGGGATGCACTTGGTTTGCTGGTTCAAGATATTGCTACAACAATTACAGCCTTGGTAATTGCTTTTGAGGCAAACTGGCAACTTTCTCTCATCATTCTTGTTTTGCTACCTCTACTATTAGTAAATGGATATTTGCAAATCAAGTCCATGCAAGGATTCAGCACAGATGCGAAGAAACAATATGAGGAAGCAAGTCAAGTGGCGAATGATGCAGTAAGGAACATCAGAACAGTTGCCGCTTTCTGTGCTGAAGAGAAGGTGATGGAGTTATACCAGAAGAAATGTGTAGGACCAATCCAGACAGGTATAAGGCAAGGTTTGGTCAGCGGAACTGGTTTTGGTTTATCATTCTTCTTTCTGTTCTCTGTCTATGCATGCAGTTTTTATGCTGGAGCCAGACTTGTTGAGAATGGCAAAACATCAATCTCAGATGTTTTTCGTGTATTCTATTCTCTCACAATGGCAGCTGTAGCATTATCTCAATCGAGCTTCCTGGCCCCAAGTGCCAGTAAAGCAAAAAGTTCTGCTGCTTCTATATTTGCTATTCTTGATCAGAAATCAAAAACAGACCCCAGTGATGAGTCCGGAATGACATTGCAAGATGTGAAGGGAGAGATTGAGTTCCACCATGTCACTTTCAAGTATCCAACCAGGCCTGATGCTCATATATTCAGAGATTTTTCCTTGACCATTCACTCAGGACAGACAGTTGCTCTAGTTGGTGAAAGTGGAAGTGGAAAGTCTACAGTGATCTCATTGTTGCAAAGATTTTATGACCCAGATTCAGGTCAGATTAAACTGGATGGAACAGAAATCCAAAAGCTACAACTTAAATGGTTTAGGCAGCAGATGGGCCTGGTAAGCCAGGAGCCTGTGTTGTTTAATGACACCATCAGAGCCAATATTGCATACGGAAAAGGTGGTGATGCAACAGAAGCTGAAATTATAGCTGCAGCAGAACTGGCAAATGCCCACAAGTTCATTAGCAGTCTGCAGCAGGGTTATGATACAGTAGTGGGGGAGAGAGGGATTCAACTATCTGGAGGGCAGAAACAACGGGTGGCAATTGCAAGAGCCATAGTTAAGAGTCCAAAAATGTTACTACTAGATGAAGCTACCAGTGCACTCGATGCTGAGTCTGAAAAAGTGGTGCAGGATGCACTTGACCGAGTGAGGGTGGACAGAACCACAATTGTGGTGGCTCACAGGCTATCCACCATAAAAGGTGCAGATTCAATTGCAGTGATTAAAAATGGAATCATTGCAGAGAAAGGAAAGCATGACACTTTGCTCAATAGAGGTGGTACCTATGCTTCCTTAGTAGCACTGCACACAAGTGCTTCTACATCTTAG 4089 0.4209 MQLLSTKRPANFGPRSPFAIVIGKCQLVSINLIVFFPSFSCCFVVLLCHHSEKAGSNLKFAKSICFLVVSVSCNQQRFFLGKMVAEAKLDGDITSAEMTGSTSHPPVLGPENTQEMDGKQQDSKKNKEKDQSNKTVPFYKLFSFADSWDYLLMFVGTISAVGNGISMPLMIIIIGDTIDAFGGNADTTLIVHEVSKVSVKFAFMGAGTFFVAFLQVACWVITGERQAARIRALYLKAILRQDIGFFDKETNSGEVVGRMSGDTVLIQDAMGEKVGKFTQYVASCLGGLVVAFIKGWLLTLVLLSSLPLLVLSGSFMSYAFAKMASRGQAAYSEAATIVEQTIGSIRTVASFTGEKQAIARYNQSLTKAYRTGVQEGVAAGLGLGSVRLFVYCSYALAVWFGGKMVLEKGYTGGEVMSIFFAVLTGSLSLGQASPSLTAFAAGQAAAFKMFETIKRQPDIDAYETVGRQLDDISGDIEFREVCFSYPSRPDELIFNGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLREFQLKWIRQKIGLVSQEPILFTCSIKENIAYGKDGATDEEIRAAAELANASKFIDKFPYGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQETLDRIMINRTTIIVAHRLSTIRNADIIAVIHQGKVVEKGTHAELTKDPDGAYSQLIRLQEIKKDSEQHGANENYVDSSQRSLSRGSSGIGNSSHNSFRISNATMETSEGGPEDLPSAASHTPLDVPLLRLAYLNKPEIPVLLIGTLAAAVTGAILPIMGLLVSKMINTFFEPADELRRDSKFYALIFVALSLGSFLFHPLRSYFFSVAGSKLIKRIRIMCFEKIIHMEVGWFDKGEHSSGALGARLSTDAASIRTLVGDALGLLVQDIATTITALVIAFEANWQLSLIILVLLPLLLVNGYLQIKSMQGFSTDAKKQYEEASQVANDAVRNIRTVAAFCAEEKVMELYQKKCVGPIQTGIRQGLVSGTGFGLSFFFLFSVYACSFYAGARLVENGKTSISDVFRVFYSLTMAAVALSQSSFLAPSASKAKSSAASIFAILDQKSKTDPSDESGMTLQDVKGEIEFHHVTFKYPTRPDAHIFRDFSLTIHSGQTVALVGESGSGKSTVISLLQRFYDPDSGQIKLDGTEIQKLQLKWFRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIIAAAELANAHKFISSLQQGYDTVVGERGIQLSGGQKQRVAIARAIVKSPKMLLLDEATSALDAESEKVVQDALDRVRVDRTTIVVAHRLSTIKGADSIAVIKNGIIAEKGKHDTLLNRGGTYASLVALHTSASTS* 1363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g05052 1362 FunFam ABC transporter B family member 1 466 715 - -
Rops2g05052 1362 ProSitePatterns ABC transporters family signature. 615 629 IPR017871 GO:0005524|GO:0016887
Rops2g05052 1362 FunFam ABC transporter B family member 1 1108 1357 - -
Rops2g05052 1362 FunFam ABC transporter B family member 1 777 1081 - -
Rops2g05052 1362 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1118 1355 IPR003439 GO:0005524
Rops2g05052 1362 CDD ABC_MTABC3_MDL1_MDL2 476 714 - -
Rops2g05052 1362 Pfam ABC transporter transmembrane region 796 1068 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Rops2g05052 1362 Pfam ABC transporter transmembrane region 153 427 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Rops2g05052 1362 MobiDBLite consensus disorder prediction 721 751 - -
Rops2g05052 1362 MobiDBLite consensus disorder prediction 95 131 - -
Rops2g05052 1362 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 797 1083 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Rops2g05052 1362 PANTHER ABC TRANSPORTER B FAMILY 116 717 IPR039421 -
Rops2g05052 1362 MobiDBLite consensus disorder prediction 726 751 - -
Rops2g05052 1362 FunFam Uncharacterized protein 1082 1108 - -
Rops2g05052 1362 Gene3D ABC transporter type 1, transmembrane domain 140 1088 IPR036640 GO:0005524|GO:0016020
Rops2g05052 1362 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 154 441 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Rops2g05052 1362 SUPERFAMILY ABC transporter transmembrane region 134 458 IPR036640 GO:0005524|GO:0016020
Rops2g05052 1362 CDD ABC_6TM_Pgp_ABCB1_D2_like 786 1100 - -
Rops2g05052 1362 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 470 714 IPR027417 -
Rops2g05052 1362 CDD ABC_6TM_Pgp_ABCB1_D1_like 153 437 - -
Rops2g05052 1362 MobiDBLite consensus disorder prediction 117 131 - -
Rops2g05052 1362 Gene3D - 466 715 IPR027417 -
Rops2g05052 1362 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 476 712 IPR003439 GO:0005524
Rops2g05052 1362 Pfam ABC transporter 1137 1286 IPR003439 GO:0005524
Rops2g05052 1362 Pfam ABC transporter 495 643 IPR003439 GO:0005524
Rops2g05052 1362 SUPERFAMILY ABC transporter transmembrane region 784 1102 IPR036640 GO:0005524|GO:0016020
Rops2g05052 1362 SMART AAA_5 1145 1338 IPR003593 GO:0016887
Rops2g05052 1362 SMART AAA_5 503 675 IPR003593 GO:0016887
Rops2g05052 1362 Gene3D - 1108 1361 IPR027417 -
Rops2g05052 1362 CDD ABC_MTABC3_MDL1_MDL2 1118 1353 - -
Rops2g05052 1362 MobiDBLite consensus disorder prediction 95 109 - -
Rops2g05052 1362 ProSitePatterns ABC transporters family signature. 1258 1272 IPR017871 GO:0005524|GO:0016887
Rops2g05052 1362 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1107 1355 IPR027417 -
Rops2g05052 1362 FunFam ABC transporter B family member 9 140 472 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g05052 Rops-Chr2 90619227 90629274 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g05052 134 1356 Calmodulin-binding Proteins AT2G36910 43.590 0.0 1024
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g05052 K05658 - gmx:100777713 1999.56