Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g05051 ATGTTGTTCTTGGGAAGTAAAACTTTTGGTTGTAAAAGCTTTTTTCCGTTTAGAGTCATTGGTAGAGGGGTTTGTAAGCAAAAGAAGTCTTCTTCCAAGAAAATGGAGGGGAATATCAGTTTGGATGGAGATAATACTGCAAGTCTTCAACCAGTTGTAGATTCTGACAGAATGCAAGATTCAAAGAAGAACAAGGCCAAAGATGAAACCACCAACACAGTACCCTTATACAAGCTTTTCTCATTTGCTGATCCTTTGGATCATTTATTGATGTTTGTGGGCACTGTGGGTGCTATTGGGAATGGAATCTCCATGCCCTTAATGACTTTAATATTTGGAAGTATGATCAATGCATTTGGAGGATCTGCAGACACCAAAGAAGTTGTTGATGAAGTTTCCAAGGTGTCTCTCAAATTTGTATACTTGGCTGCGGGTACCTTTGTTGCATCACTTTTGCAGTTGACTTGCTGGATGATCACTGGGGAGAGACAGGCTGCAAGAATTAGAGGCTTATACCTTCAAACAATATTGAGGCAAGATGTGAGCTTCTTTGATAAGGAAACTAATACTGGAGAGGTTGTTGGAAGGATGTCAGGTGATACTGTTCTTATTCAAGATGCCATGGGTGAGAAGGTGGGACAGTTCATACAGTTAGTGTCAACTTTCTTTGGAGGTTTTGTCATAGCATTCATCAAGGGATGGCTTCTAACTGTTGTCATGCTATCTTCCATTCCACTTCTAGTCTTGTCTGGTGCTATGGCGAGCATGGTTATTACGAAAGCATCATCCAGTGGACAAGCAGCTTATTCTACAGCAGCAACTGTAGTAGAGCAGACAATAGGTTCTATCCGAACTGTTGCATCATTCACTGGGGAGAAGCAAGCCATAGCTAAATATGATCAGTCCTTAATCAAAGCTTACAAGACTGTGGTGCAAGAGGCACTAGCATCTGGTTTGGGGTTTGGTTCACTCTATTTTGTTGTTATCGCTAGTTATGGTTTGGCTGTATGGTATGGTGGGAAGATGGTGATAGAGAAAGGATATAATGGAGGGGAGGTTGTGACTGTAATTTTTGCTGTATTGACCGGCTCTATGTCACTTGGGCAGGCATCTCCAAGCTTGAGTGCTTTTGCTGCAGGACAAGCTGCAGCATTTAAGATGTTTGAAACGATTAAAAGGAAGCCAGAAATTGATGCTGACGCTACTGGTCGGAAGCTTGATGACATTCGTGGAGATATAGAACTTAAGGAGGTTTGCTTTAGTTATCCTACAAGACCAGATGAGCTAATATTCAATGGATTTTCTCTTTCCATACCAAGTGGCACTACTGCAGCTTTGGTAGGGCAAAGTGGGAGTGGGAAATCCTCAGTTGTTAGTTTGATAGAGAGATTCTATGATCCACAAGCTGGTGAAGTTCTCATTGATGGTATCAACCTCAGAGAATTTCAACTGAAATGGATCAGACAGAAAATAGGCCTAGTCAGCCAGGAACCAGTTCTCTTCACTTGTACCATTAAAGAGAATATTGCCTATGGCAAGGATGGTGCAACTGATGAAGAAATCAGAGTTGCAGTAGAACTTGCTAATGCTGCCAAATTTATAGATAAACTTCCTCAGGGACTAGACACAATGGTTGGTGAGCATGGAACTCAGCTCTCTGGGGGCCAAAAGCAAAGAGTTGCAATAGCAAGAGCAATTTTGAAAGACCCAAGAATCCTACTTCTGGATGAAGCCACGAGTGCCCTTGATGCTGAATCTGAGAGAATTGTACAAGATGCATTGGACAGAATAATGATAAACCGAACAACTGTCATTGTAGCCCACCGATTAAGTACTATAAAAAATGCTGATACCATTGCTGTTATTCATCAAGGAAAAATAGTTGAAAAAGGTTCACATGCTGAGCTCACCAGGGATCCTGATGGAGCCTATAGCCAACTCATCAGACTGCAAGAAATGAAGGGGTCAGAAGACAAGCCAGAAAGTGTAGTGCATTCTGGAAGACTATCAAGTCAAAGATCCTTTTCCTCGCAATCTATAAGCCAAAGATCATCTGGAGTTGGAAACAGTGGTCGTCACTCTTTCTCAGCACCACATGTTGTGCCCACAACAGTTGCATTCATGGAATCTACTGGTGAAGGAGCTCAAGATCCTCCTTCAACAGTTTCTTCAACACCAGAAGTGCCACTTTATCGCCTGGCTTATTTAAACAAGCCTGAGATTCCAGTCTTACTAATGGGGACTATAGCTGCTGTGCTAAATGGAGCAACATTTCCTATTTTTGGGCTCTTGCTTTCCAAAATGATAAGTATTTTCTACGAGCCAGCTGATGAAATTCGTAAAGATTCAAAAGTTTGGGCATTAGTATTTGTCGCGCTTGGTGTGGCATCATTAGTCATATTTCCGTGTAGATTTTACTTTTTTGGCATTGCTGGAGGTAAGTTGATCAAAAGGATCCGGAAAATGTGTTTCGAGAAAGCAGTTCACATGGAAGTAAGTTGGTTTGATGAAGCTGAGCATTCAAGTGGAGCAATTGGAGCAAGGCTCTCTACTGATGCAGCTTCTGTTCGAGCGTTGGTTGGGGATGCACTTGGTTTGCTGGTTCAAAATGTTGCTGCAGCAATAGCTGGCTTGGTAATTGCTTTTGAATCGAGCTGGCAGCTTGCTCTTATAATCCTTGCTCTGGCACCTCTATTAGCACTAAATGGATATTTGCAAGTAAAATTCTTGAAAGGATTCAGCGCAGATGCTAAGAAACTGTATGAGGAAGCAAGTCAAGTGGCCAATGATGCTGTAGGGAGTATAAGAACAGTTGCTTCTTTCTGTGCTGAAGGGAAGGTGATGGAATTATACCAGGAAAAATTTTATGCATGCAGTTTTTATGCAGGAGCTCGGCTTGTAGAGGATGGCAAATCATCATTCTCAGATGTTTTCCGTGTCTTTTTTGCCCTCAGCATGGCAGCTATAGGAATCTCTCAATCTGGGTCCTTGGTCCCTGATTCAACTAAAGCAAAAAGTGCTGCTGCTTCCATATTTGCTATTCTAGATCGGAAGTCACAAATAGACCCCAGTGATGAATCTGGAATGACATTGGAAGAAGTCAGGGGAGAAATTGAGTTTAACCATGTCAGTTTCAAGTATCCTACCAGACCTGATGTTCAAATATTCACAGATCTTTGCTTGACCATTCATAGTGGCAAGACAGTTGCACTGGTTGGAGAAAGTGGCAGTGGAAAATCAACAGTGGTCTCATTAATACAAAGATTTTATAACCCAGACTCAGGTCACATTACACTGGATGGAAAAGAAATTCAGAGCCTGCAGGTGAAATGGCTAAGACAACAGACGGGCCTGGTAAGCCAGGAGCCTGTGCTGTTTAATGACACCATCCGAACCAATATTGCATATGGAAAAGGAGGAGATGCAACGGAGGCAGAAATTATAGCTGCAGCAGAACTGGCAAATGCCCACAAGTTCATCAGTAGTTTGCAGCAGGGTTATGACACAATAGTAGGGGAGCGAGGAGTTCAATTATCTGGGGGACAGAAGCAACGGGTGGCAATTGCACGTGCTATAGTGAAAAATCCAAAGATATTACTACTAGATGAAGCTACCAGTGCACTTGATGCTGAGTCTGAAAAAGTGGTTCAGGATGCACTTGACCGCGTTATGGTGGAGAGAACCACAATAGTAGTGGCTCATAGGTTATCCACTATTAAGGGTGCAGATTTAATTGCAGTAGTTAAGAATGGAGTCATAGCAGAGAAGGGTAAGCATGAAGCATTACTCCGTAAGGGAGGCAACTATGCATCCTTAGTAGCATTGCACACAAGTTCTTCTTCAGCTTAG 3849 0.4237 MLFLGSKTFGCKSFFPFRVIGRGVCKQKKSSSKKMEGNISLDGDNTASLQPVVDSDRMQDSKKNKAKDETTNTVPLYKLFSFADPLDHLLMFVGTVGAIGNGISMPLMTLIFGSMINAFGGSADTKEVVDEVSKVSLKFVYLAAGTFVASLLQLTCWMITGERQAARIRGLYLQTILRQDVSFFDKETNTGEVVGRMSGDTVLIQDAMGEKVGQFIQLVSTFFGGFVIAFIKGWLLTVVMLSSIPLLVLSGAMASMVITKASSSGQAAYSTAATVVEQTIGSIRTVASFTGEKQAIAKYDQSLIKAYKTVVQEALASGLGFGSLYFVVIASYGLAVWYGGKMVIEKGYNGGEVVTVIFAVLTGSMSLGQASPSLSAFAAGQAAAFKMFETIKRKPEIDADATGRKLDDIRGDIELKEVCFSYPTRPDELIFNGFSLSIPSGTTAALVGQSGSGKSSVVSLIERFYDPQAGEVLIDGINLREFQLKWIRQKIGLVSQEPVLFTCTIKENIAYGKDGATDEEIRVAVELANAAKFIDKLPQGLDTMVGEHGTQLSGGQKQRVAIARAILKDPRILLLDEATSALDAESERIVQDALDRIMINRTTVIVAHRLSTIKNADTIAVIHQGKIVEKGSHAELTRDPDGAYSQLIRLQEMKGSEDKPESVVHSGRLSSQRSFSSQSISQRSSGVGNSGRHSFSAPHVVPTTVAFMESTGEGAQDPPSTVSSTPEVPLYRLAYLNKPEIPVLLMGTIAAVLNGATFPIFGLLLSKMISIFYEPADEIRKDSKVWALVFVALGVASLVIFPCRFYFFGIAGGKLIKRIRKMCFEKAVHMEVSWFDEAEHSSGAIGARLSTDAASVRALVGDALGLLVQNVAAAIAGLVIAFESSWQLALIILALAPLLALNGYLQVKFLKGFSADAKKLYEEASQVANDAVGSIRTVASFCAEGKVMELYQEKFYACSFYAGARLVEDGKSSFSDVFRVFFALSMAAIGISQSGSLVPDSTKAKSAAASIFAILDRKSQIDPSDESGMTLEEVRGEIEFNHVSFKYPTRPDVQIFTDLCLTIHSGKTVALVGESGSGKSTVVSLIQRFYNPDSGHITLDGKEIQSLQVKWLRQQTGLVSQEPVLFNDTIRTNIAYGKGGDATEAEIIAAAELANAHKFISSLQQGYDTIVGERGVQLSGGQKQRVAIARAIVKNPKILLLDEATSALDAESEKVVQDALDRVMVERTTIVVAHRLSTIKGADLIAVVKNGVIAEKGKHEALLRKGGNYASLVALHTSSSSA* 1283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g05051 1282 Gene3D - 1028 1281 IPR027417 -
Rops2g05051 1282 SMART AAA_5 1065 1258 IPR003593 GO:0016887
Rops2g05051 1282 SMART AAA_5 440 612 IPR003593 GO:0016887
Rops2g05051 1282 Pfam ABC transporter 432 580 IPR003439 GO:0005524
Rops2g05051 1282 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1038 1275 IPR003439 GO:0005524
Rops2g05051 1282 FunFam ABC transporter B family member 1 724 956 - -
Rops2g05051 1282 FunFam Uncharacterized protein 999 1028 - -
Rops2g05051 1282 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 413 649 IPR003439 GO:0005524
Rops2g05051 1282 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 406 651 IPR027417 -
Rops2g05051 1282 Gene3D ABC transporter type 1, transmembrane domain 54 438 IPR036640 GO:0005524|GO:0016020
Rops2g05051 1282 CDD ABC_6TM_Pgp_ABCB1_D1_like 91 375 - -
Rops2g05051 1282 ProSitePatterns ABC transporters family signature. 552 566 IPR017871 GO:0005524|GO:0016887
Rops2g05051 1282 Gene3D ABC transporter type 1, transmembrane domain 713 1026 IPR036640 GO:0005524|GO:0016020
Rops2g05051 1282 Pfam ABC transporter transmembrane region 744 954 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Rops2g05051 1282 Pfam ABC transporter transmembrane region 91 365 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Rops2g05051 1282 ProSitePatterns ABC transporters family signature. 1178 1192 IPR017871 GO:0005524|GO:0016887
Rops2g05051 1282 Pfam ABC transporter 1058 1206 IPR003439 GO:0005524
Rops2g05051 1282 FunFam ABC transporter B family member 1 403 652 - -
Rops2g05051 1282 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 745 955 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Rops2g05051 1282 MobiDBLite consensus disorder prediction 35 67 - -
Rops2g05051 1282 CDD ABC_MTABC3_MDL1_MDL2 413 651 - -
Rops2g05051 1282 CDD ABC_6TM_Pgp_ABCB1_D2_like 734 1021 - -
Rops2g05051 1282 PANTHER ABC TRANSPORTER B FAMILY 54 654 IPR039421 -
Rops2g05051 1282 FunFam ABC transporter B family member 9 78 409 - -
Rops2g05051 1282 MobiDBLite consensus disorder prediction 654 694 - -
Rops2g05051 1282 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 92 379 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Rops2g05051 1282 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1027 1275 IPR027417 -
Rops2g05051 1282 CDD ABC_MTABC3_MDL1_MDL2 1038 1273 - -
Rops2g05051 1282 Gene3D - 439 659 IPR027417 -
Rops2g05051 1282 MobiDBLite consensus disorder prediction 665 692 - -
Rops2g05051 1282 SUPERFAMILY ABC transporter transmembrane region 732 1022 IPR036640 GO:0005524|GO:0016020
Rops2g05051 1282 FunFam ABC transporter B family member 1 1028 1277 - -
Rops2g05051 1282 SUPERFAMILY ABC transporter transmembrane region 78 398 IPR036640 GO:0005524|GO:0016020
Rops2g05051 1282 MobiDBLite consensus disorder prediction 36 55 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g05051 Rops-Chr2 90603643 90610538 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g05051 708 1279 Calmodulin-binding Proteins AT2G36910 37.785 2.34e-121 406