Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g05050 ATGGAGGGGGATATCAGTTTGGATGGAGATATTTCGAATCTTCAACCAGTTGTAGATCCTGACAGCAAGCAAGAATCAAAGAAGAGTGAGGCCAAAGTTGAAACCACCAACACAGTACCCTTATACAAGCTTTTCTCATTTGCTGATCCTTTGGATCATTTATTGATGTTTGTGGGCACTGTGGGTGCCATTGGGAACGGAATATCCATGCCCTTAATGACTTTAATATTTGGAAATATGATCAATGCATTTGGAGGATCTGCAGACACCAAAGAAGTTGTTGATGAAGTTTCCAAGGTGTCACTAAAGTTTGTATACTTGGCAGTGGGTACCTTTATTGCATCACTTGTGCAGTTGACTAGCTGGATGATCACTGGGGAGAGGCAGGCTGCAAGAATTAGAGGCTTATACCTTCAGACAATCTTGAGGCAAGATGTGAGCTTCTTTGATAAAGAAACTAATACTGGAGAGGTTGTTGGAAGGATGTCAGGTGACACTGTTCTTATTCAAGATGCCATGGGTGAGAAGGTGGGACAGTTCATACAGTTAGTGGCAACTTTCTTAGGAGGTTTTGTCATAGCATTCATCAAGGGATGGCTTCTAACTGTTGTCATGCTATCTTGTATTCCACTTTTTATCTTGTCTGGTGCTATGATGAGCACGGTGATTGCAAAAGCATCATCGAGTGGAAAAGTAGCTTATTCTACAGCAGCAAGTGTAGTAGAACAGACAATAGGTTCTATCCGAACTGTTGCATCATTCACTGGAGAGAAGCAAGCTATAGCAAAATATAATCAGTCCTTAATTAAAGCTTACAAGACTGTAGTGCACGAGGCACTAGCATCTGGCTTGGGGTTTGGTTCACTCCATTTTGTTGCTATCTCCAGTTATGGTTTGACTGTATGGTTTGGTGGGAAAATGGTAATAGAGAAAGGATATAATGGAGGGGAGGTTGTGACTGTAATTTTTGCTGTATTGATGGGCTCCATGTCACTTGGGCAGGCATCTCCAAGCTTGAGTGCTTTTGCTGCAGGACAAGCTGCAGCCTTTAAGCTGACCACGGGCTGCCAGGAACCAGTTCTCTTTACTTGTACAATTAAAGAGAATATTGCTTATGGCAAGGATGGTGCAACTGATGAAGAAATCAGAGCTGCAGCAGAACTTGCTAATGCTGCCAAATTTATAGATAAACTTCCTCAGGGACTAGACACAATGGTTGGTGAGCATGGAACTCAGCTCTCTGGGGGTCAAAAGCAAAGAGTTGCAATAGCAAGAGCAATTTTGAAAGACCCAAGAATCCTACTTCTGGATGAAGCTACAAGTGCCCTTGATGCTGAATCTGAGAGAATTGTACAAGAGGCATTGGACAGAATAATGATAAACCTAACAACTGTCATTGTAGCCCACCGCTTAAGTACTATAAAGAATGCAGATATCATTGCTGTTATTCATCGTGGAAAAATAGTTGAAAAAGGTTCACATGCTGAGCTCACCAGGGATCCTGACAGAGCCTATAGCCAGCTCATTAGACTGCAAGAAATGAAGGGGTCAGAACAGAATGTTGCGAATGACACAGACAAGCCAGAAAGTACAGTCCATTCTGGAAGACTATCAAGTCAAAGATCTTTTTCCTTAAGATCTATAAGCCAAAGGTCATCTGGAGTTGGAAACAGTGGTCGTCACTCATTCTCAGCATCATATGTTGTGCCCACAACAGTTGGCTTCATGGAATCTGCTAGTGGAGGACCTCAAGCTCCTCCTTCACCACCAGAAGTGCCACTTTATCGCCTGGCTTATTTAAACAAGCCTGAGATTCCAGTCTTACTAATAGGGACTATAGCTGCAGTGCTAAATGGAGTAATATTTCCTATTTTTGGGCTTTTGCTCTCCAAAATGATGAGTATCTTCTACGAGCCAGCTGATGAACTTCGTAAAGATTCAAAAGTTTGGGCATTAGTCTTTGTGGCGCTTGGTGTGGCATCATTACTCATATTTCCATGTAGATTCTACTTTTTTGGCGTTGCTGGTGGTAAGTTGATCAAAAGAATCCGGAAAATGTGTTTTAAGAAAGTAGTTCACATGGAAGTAAGTTGGTTTGATGAAGCTGAGCATTCAAGCGGAGCACTTGGAGCAAGGCTCTCTACTGATGCAGCTTCTGTTCGAGCGCTGGTTGGGGATGCACTTGGTTTGCTGGTTCAAAATGTTGCTGCAGCAATAGCTGGCTTGGTAATTGCTTTTAAAGCCAGCTGGCAGCTTGCTCTTATAGTCCTTGCTCTGGCACCTCTATTAGCACTAAATGGATATGTGCAAGTGAAGTTCTTGAAAGGATTCAGCGCAGATGCTAGGAAACTGTATGAGGAAGCAAGTCAAGTGGCCAATGATGCTGTAGGGAGTATAAGAACAGTTGCTTCTTTCTGTGCTGAAGGGAAGGTGATGGAATTATACCAGGAAAAATTTTATGCATGCAGTTTTTATGCAGGAGCTCGGCTTGTAGAGGATGGCAAATCATCATTCTCAGATGTTTTCCGTGTCTTTTTTGCCCTCAGCATGGCAGCTATTGGAATCTCTCAAACGGGATCCTTGGTCCCTGATTCAACTAAAGCAAAAAGTGCTGCTGCTTCCATATTTGCTATTCTAGATCGGAAGTCACAAATAGACCCCAGTGATGAATCTGGAATGACATTGGAAGAAGTCAAGGGAGAAATTGAGTTTAACCATGTAAGTTTCAAATATCCTGCCAGACCTGATGTTCAAATATTCAGAGATCTTTGCTTGACCATTCATAGTGGCAAGACAGTTGCACTGGTTGGAGAAAGTGGAAGTGGAAAATCAACAGTGATCTCATTGATACAAAGATTTTATGACCCAGACTCAGGTACAATTACCCTGGATGGAAAAGAAATCAATAGGCTGCAAGTGAAATGGCTAAGACAACAGATGGGCCTGGTAAGCCAGGAGCCTGTATTGTTTAATGACACCATCCGAGCCAATATTGCATATGGAAAAGGAGGAGATGCAACAGAGGCAGAAATTATAGCTGCAGCAGAACTTGCAAATGCTCACAATTTTATTAGTAGTTTGCAGAAGGGTTATGGGACAATGGTAGGGGAGCGAGGAGTTCAATTATCTGGGGGACAGAAGCAACGGGTGGCAATTGCATGTGCTATAGTGAAGAATCCAAAGATATTACTACTAGATGAAGCTACCAGTGCACTTGATGCTGACGTCTGA 3231 0.4259 MEGDISLDGDISNLQPVVDPDSKQESKKSEAKVETTNTVPLYKLFSFADPLDHLLMFVGTVGAIGNGISMPLMTLIFGNMINAFGGSADTKEVVDEVSKVSLKFVYLAVGTFIASLVQLTSWMITGERQAARIRGLYLQTILRQDVSFFDKETNTGEVVGRMSGDTVLIQDAMGEKVGQFIQLVATFLGGFVIAFIKGWLLTVVMLSCIPLFILSGAMMSTVIAKASSSGKVAYSTAASVVEQTIGSIRTVASFTGEKQAIAKYNQSLIKAYKTVVHEALASGLGFGSLHFVAISSYGLTVWFGGKMVIEKGYNGGEVVTVIFAVLMGSMSLGQASPSLSAFAAGQAAAFKLTTGCQEPVLFTCTIKENIAYGKDGATDEEIRAAAELANAAKFIDKLPQGLDTMVGEHGTQLSGGQKQRVAIARAILKDPRILLLDEATSALDAESERIVQEALDRIMINLTTVIVAHRLSTIKNADIIAVIHRGKIVEKGSHAELTRDPDRAYSQLIRLQEMKGSEQNVANDTDKPESTVHSGRLSSQRSFSLRSISQRSSGVGNSGRHSFSASYVVPTTVGFMESASGGPQAPPSPPEVPLYRLAYLNKPEIPVLLIGTIAAVLNGVIFPIFGLLLSKMMSIFYEPADELRKDSKVWALVFVALGVASLLIFPCRFYFFGVAGGKLIKRIRKMCFKKVVHMEVSWFDEAEHSSGALGARLSTDAASVRALVGDALGLLVQNVAAAIAGLVIAFKASWQLALIVLALAPLLALNGYVQVKFLKGFSADARKLYEEASQVANDAVGSIRTVASFCAEGKVMELYQEKFYACSFYAGARLVEDGKSSFSDVFRVFFALSMAAIGISQTGSLVPDSTKAKSAAASIFAILDRKSQIDPSDESGMTLEEVKGEIEFNHVSFKYPARPDVQIFRDLCLTIHSGKTVALVGESGSGKSTVISLIQRFYDPDSGTITLDGKEINRLQVKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIIAAAELANAHNFISSLQKGYGTMVGERGVQLSGGQKQRVAIACAIVKNPKILLLDEATSALDADV* 1077
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g05050 1076 FunFam ABC transporter B family member 20 892 1076 - -
Rops2g05050 1076 ProSitePatterns ABC transporters family signature. 1042 1056 IPR017871 GO:0005524|GO:0016887
Rops2g05050 1076 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 57 344 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Rops2g05050 1076 FunFam Uncharacterized protein 863 892 - -
Rops2g05050 1076 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 902 1076 IPR003439 GO:0005524
Rops2g05050 1076 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 289 510 IPR003439 GO:0005524
Rops2g05050 1076 MobiDBLite consensus disorder prediction 515 545 - -
Rops2g05050 1076 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 609 819 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Rops2g05050 1076 CDD ABC_6TM_Pgp_ABCB1_D1_like 56 340 - -
Rops2g05050 1076 FunFam ABC transporter B family member 1 588 820 - -
Rops2g05050 1076 Pfam ABC transporter 357 441 IPR003439 GO:0005524
Rops2g05050 1076 MobiDBLite consensus disorder prediction 1 32 - -
Rops2g05050 1076 ProSitePatterns ABC transporters family signature. 413 427 IPR017871 GO:0005524|GO:0016887
Rops2g05050 1076 FunFam ABC transporter B family member 9 43 360 - -
Rops2g05050 1076 PANTHER ABC TRANSPORTER B FAMILY 820 1075 IPR039421 -
Rops2g05050 1076 Gene3D ABC transporter type 1, transmembrane domain 532 818 IPR036640 GO:0005524|GO:0016020
Rops2g05050 1076 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 356 512 IPR027417 -
Rops2g05050 1076 Gene3D - 892 1074 IPR027417 -
Rops2g05050 1076 SMART AAA_5 315 494 IPR003593 GO:0016887
Rops2g05050 1076 SMART AAA_5 929 1063 IPR003593 GO:0016887
Rops2g05050 1076 Pfam ABC transporter 922 1070 IPR003439 GO:0005524
Rops2g05050 1076 SUPERFAMILY ABC transporter transmembrane region 44 425 IPR036640 GO:0005524|GO:0016020
Rops2g05050 1076 Gene3D ABC transporter type 1, transmembrane domain 819 891 IPR036640 GO:0005524|GO:0016020
Rops2g05050 1076 Gene3D ABC transporter type 1, transmembrane domain 35 357 IPR036640 GO:0005524|GO:0016020
Rops2g05050 1076 FunFam ABC transporter B family member 28 346 514 - -
Rops2g05050 1076 Pfam ABC transporter transmembrane region 56 330 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Rops2g05050 1076 Pfam ABC transporter transmembrane region 608 818 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Rops2g05050 1076 SUPERFAMILY ABC transporter transmembrane region 596 886 IPR036640 GO:0005524|GO:0016020
Rops2g05050 1076 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 891 1074 IPR027417 -
Rops2g05050 1076 CDD ABC_6TM_Pgp_ABCB1_D2_like 598 885 - -
Rops2g05050 1076 Gene3D - 358 531 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g05050 Rops-Chr2 90588825 90597203 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g05050 357 518 Calmodulin-binding Proteins AT2G36910 59.509 3.27e-50 192
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g05050 K05658 - gmx:100799760 1120.53