Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g05049 ATGACAGGAGATATCAGTTTGGATGGAGATACTGCGAATATTCAACCAGTTGTAGATCTTGACAGCAAGCAAGATCCAAAGAAGAGTGAGGCCAAAGTTGAAACCACCAACACAGTACCCTTATACAAGCTTTTCTCATTTGCTGATCCTTTTGACCATTTGTTGATGTTCCTGGGGACTGTGGGTGCTATTGGGAATGGAGTCTCCATGCCTGTGATGCTTTTAATATTTGGAAATATGATCAATGCATTTGGAGAATCCGAAAACGCTGAAAAAGTGGTTGATGAAGTTTCTAAGGTGTCTCTGAAATTAGTATACTTGGCTGTGGGTGCCTTTTTTGCGTCACTTTTGCAGTTGACTTGCTGGATGATCACTGGGGATAGACAGGCTGCAAGAATTAGAGGCTTATACCTTCAAACAATATTGAGGCAAGATGTGAGCTTCTTTGATAAGGAAACTAATACTGGAGAGGTTGTTGGAAGGATGTCAGGTGATACTGTTCTTATTCAAGATGCCATGGGTGAGAAGGTGGGACAGTTTATACAGTGTGTGGCAACTTTTTTTGGAGGTTTTGTCGTAGCATTCATTAAGGGATGGCTTCTAACTTTTGTCATGCTATCTAGTATTCCACTTCTTGTCTTGTCTGGTGCTATGACAAGCATGGTTATTGCAAAAGCATCATCCAGAGGACAAGCAGCCTATTCTACAGCAGCAACTGTAGTAGAGCAGACAATAGGTTCTATCCGAACTGTTGCATCATTCACTGGGGAGAAGCAAGCTATAACTAAATACGATCAGTCCTTAATCAAAGCTTACAAGACTGGAGTGCAAGAGGCACTAGCTTCTGGTTTGGGATTTGGTTCACTCTTTTTTGTTTTTAACGCCAGTTATGGTTTGGCTGTATGGTTTGGTGGGAAAATGGTGATAGAGAAAGGATATACCGGAGGGGATGTTATGACTGTAATTTTTTCTGTATTGACTGGCGCCATGTTTCTTGGGCAGGCATCTCCAAGCTTGAGTGCTTTTGCTGCCGGACAAGCTGCAGCATTTAAGATGTTTGAAACTATTAAAAGGAAACCAGAAATTGATGCTGACGCCACTGGTCGGCAGCTTGATGACATTCGTGGAGACATAGAACTTAGGGAGGTTTGCTTTAGTTATCCTACAAGACCAGATGAACTGATATTCAATGGATTTTCTCTTTCAATACCAAGTGGTACTACTGCAGCTTTGGTAGGGGAAAGTGGTAGTGGGAAATCCACTGTTATTAGTTTGATAGAGAGATTCTATGATCCACAGGCTGGTGAAGTTCTCATTGATGGTATCAACCTCAGAGAGTTTCAACTGAAATGGATCAGACAGAAAATAGGCCTAGTCAGCCAGGAACCAGTTCTCTTTGCTTGTAGCATTAAAGAGAATATTAAGTATGGCAAGGATGGTGCAACTGATGAAGAAATCAAAGCTGCAGCAGAACGTGCTAATGCTTCCAAATTTATAGATAAACTTCCTCAGGGACTAGACACAATGGTTGGTGAGCATGGAACTCAGCTCTCTGGAGGTCAAAAGCAAAGAGTAGCAATAGCAAGAGCAATTTTGAAAGATCCAAGAATCCTACTTCTGGATGAAGCTACAAGTGCCCTTGATGCTGAATCTGAGAGAATTGTACAAGAGGCATTGGACAGAATAATGACAAACCGAACAACTGTTATAGTAGCCCACCGCTTAAGTACTATAAAGAATGCTGATACCATTGCTGTTATTCATCGAGGAAAACTAGTGGAAAAAGGATCACATGCTGAGCTCACCAAGGATCCTGATGGAGCCTATAGCCAGCTCATTAGACTGCAAGAAATGAAGAGACCAGAAAAGAATGTTGCAAATAACACAGACAAGCCAGAAAGTATAGTGCATTCTGGAAGACTATCAAGTCAAAGATCCTTTTCCTTGCAATCTATAAGCCAAAGATCATCTGGAGTTGGAAACAGTGGTCGTCACTCTTTCTCAGCACCACATGTTGTGCCCACAACAGTTGGCTTCATGGAATCTGCCGGTGAAGGACCTCAAGCTCCTCCTTCAACAGTTTCTTCACCACCAGAAGTGCCACTTTATCGCCTGGCTTATTTAAACAAGCCTGAGATTCCAGTCTTACTGATGGGGACTATAGCTGCAGTGGTACATGGAGTAATATTACCCATTTTTGGGCTCTTTCTTTCCGAAATGATAACTGTTTTCTACAAGCCAGCCCATGAACTTCGAAAGGATTCAAAAGTTTGGGCAATAGTATTTGTTGCGCTTGGTGTGGTATCTTTAATCGTTTTGCCATGTAGATTCTACTTTTTTGGCGTTGCTGGAGGTAAGTTGATCAAAAGGATTCGGAAAATGTGTTTTGAGAAAGTAATTCACATGGAAATAAGTTGGTTTGATGAAGCTGAGCATTCAAGTGGAGCACTTGGAGCAAGGTTCTCTACAGATGCAGCTTCTGTTCGAGCTTTGGTTGGGGATGCACTTGGTTTGCTGGTTCAAAATAGTGCTACAATAATAGCTGGCTTGGTAATTTCTTTTGAAGCGAGCTGGCAGCTTGCTCTTATAATCCTTGCTTTGGCACCTCTATTAGCAGTAAATGGATATGTGCAAGTGAAGTTCTTGAAAGGATTCAGCGCAGATGCAAAGAAGCTGTATGAGGAAGCAAGTCAAGTGGCAAATGATGCTGTAGGGAGTATAAGAACAGTTGCTTCTTTCTGTGCCGAAGAAAAGGTGATGGAACTATATCAGGAAAAATTTTATGCATGCAGTTTTTATGCTGGAGCTCGACTTATAGAGGATGACAAAGCAACATTCTCAGATGTTTTTCGAGTCTTTTTTGCTCTCAGCATGGCAGCTATGGGAATCTCTCAATCTGGGTCCTTGGTCCCTGATTCAACTAATACAAAAAGCGCTGCTGCTTCTGTCTTTGCTATTCTTGATCGAAAGTCACAAATAGATGCCAGTGATGAATCTGGAACGACATTGGAAGCAGTCAAGGGAGAAATTGAGTTTAAACATGTCAGTTTCAAGTATCCTGCCAGATCCGATGTTCAAATATTCAGAGATCTTTGCTTGACAATTCGTAGTGGCAAGACAGTGGCACTGGTTGGAGAAAGTGGAAGTGGAAAATCAACAGTGATCTCATTAATACAAAGATTTTATGACCCAGACTCAGGTCACATTACACTGGATGGAAATGAAATACAAACGCTGCAAGTGAAATGGCTAAGACAACAGATGGGCCTGGTAAGCCAAGAGCCCGTGCTGTTTAATGACACCATCCGAACCAATATTGCATATGGAAAAGGAGGAGATGCAACAGAGGCAGAAATCATAGCTGCAGCAGAACTGGCAAATGCCCACAATTTCATTAGTAGTTTGCAGCAGGTTGAGAGCAACATATTGTATATGCAGGGTTATGACACAATAGTAGGGGAGCGAGGAGTTCAATTATCTGGGGGACAGAAGCAGAGGGTGGCACTTGCACGAGCTATAGTGAAGAATCCAAAGATATTACTGCTAGATGAAGCCACCAGTGCACTTGATGCTGAGTCTGAAAAAGTGGTTCAGGATGCACTTGACCGTGTTATGGTGGACAGAACCACAATAGTAGTGGCTCATAGGTTATCCACTATTAAGGGTGCAGATTTAATTGCAGTAGTTAAGAATGGAGTCATAACAGAGAAGGGAAAGCATGAGGCATTACTGAATAAGGGAGGTCACTATGCTTCTTTAGTAGCATTGCACACAAGTGCTTCTTCATCTTAG 3792 0.4206 MTGDISLDGDTANIQPVVDLDSKQDPKKSEAKVETTNTVPLYKLFSFADPFDHLLMFLGTVGAIGNGVSMPVMLLIFGNMINAFGESENAEKVVDEVSKVSLKLVYLAVGAFFASLLQLTCWMITGDRQAARIRGLYLQTILRQDVSFFDKETNTGEVVGRMSGDTVLIQDAMGEKVGQFIQCVATFFGGFVVAFIKGWLLTFVMLSSIPLLVLSGAMTSMVIAKASSRGQAAYSTAATVVEQTIGSIRTVASFTGEKQAITKYDQSLIKAYKTGVQEALASGLGFGSLFFVFNASYGLAVWFGGKMVIEKGYTGGDVMTVIFSVLTGAMFLGQASPSLSAFAAGQAAAFKMFETIKRKPEIDADATGRQLDDIRGDIELREVCFSYPTRPDELIFNGFSLSIPSGTTAALVGESGSGKSTVISLIERFYDPQAGEVLIDGINLREFQLKWIRQKIGLVSQEPVLFACSIKENIKYGKDGATDEEIKAAAERANASKFIDKLPQGLDTMVGEHGTQLSGGQKQRVAIARAILKDPRILLLDEATSALDAESERIVQEALDRIMTNRTTVIVAHRLSTIKNADTIAVIHRGKLVEKGSHAELTKDPDGAYSQLIRLQEMKRPEKNVANNTDKPESIVHSGRLSSQRSFSLQSISQRSSGVGNSGRHSFSAPHVVPTTVGFMESAGEGPQAPPSTVSSPPEVPLYRLAYLNKPEIPVLLMGTIAAVVHGVILPIFGLFLSEMITVFYKPAHELRKDSKVWAIVFVALGVVSLIVLPCRFYFFGVAGGKLIKRIRKMCFEKVIHMEISWFDEAEHSSGALGARFSTDAASVRALVGDALGLLVQNSATIIAGLVISFEASWQLALIILALAPLLAVNGYVQVKFLKGFSADAKKLYEEASQVANDAVGSIRTVASFCAEEKVMELYQEKFYACSFYAGARLIEDDKATFSDVFRVFFALSMAAMGISQSGSLVPDSTNTKSAAASVFAILDRKSQIDASDESGTTLEAVKGEIEFKHVSFKYPARSDVQIFRDLCLTIRSGKTVALVGESGSGKSTVISLIQRFYDPDSGHITLDGNEIQTLQVKWLRQQMGLVSQEPVLFNDTIRTNIAYGKGGDATEAEIIAAAELANAHNFISSLQQVESNILYMQGYDTIVGERGVQLSGGQKQRVALARAIVKNPKILLLDEATSALDAESEKVVQDALDRVMVDRTTIVVAHRLSTIKGADLIAVVKNGVITEKGKHEALLNKGGHYASLVALHTSASSS* 1264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g05049 1263 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 57 344 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Rops2g05049 1263 MobiDBLite consensus disorder prediction 619 642 - -
Rops2g05049 1263 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 371 616 IPR027417 -
Rops2g05049 1263 PANTHER ABC TRANSPORTER B FAMILY 21 619 IPR039421 -
Rops2g05049 1263 Gene3D ABC transporter type 1, transmembrane domain 103 926 IPR036640 GO:0005524|GO:0016020
Rops2g05049 1263 Gene3D ABC transporter type 1, transmembrane domain 927 1007 IPR036640 GO:0005524|GO:0016020
Rops2g05049 1263 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 717 927 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Rops2g05049 1263 FunFam ABC transporter B family member 9 977 999 - -
Rops2g05049 1263 SUPERFAMILY ABC transporter transmembrane region 704 990 IPR036640 GO:0005524|GO:0016020
Rops2g05049 1263 CDD ABC_6TM_Pgp_ABCB1_D2_like 706 993 - -
Rops2g05049 1263 CDD ABC_MTABC3_MDL1_MDL2 1010 1254 - -
Rops2g05049 1263 CDD ABC_6TM_Pgp_ABCB1_D1_like 56 340 - -
Rops2g05049 1263 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 378 614 IPR003439 GO:0005524
Rops2g05049 1263 ProSitePatterns ABC transporters family signature. 517 531 IPR017871 GO:0005524|GO:0016887
Rops2g05049 1263 FunFam ABC transporter B family member 1 696 928 - -
Rops2g05049 1263 SMART AAA_5 405 598 IPR003593 GO:0016887
Rops2g05049 1263 SMART AAA_5 1037 1239 IPR003593 GO:0016887
Rops2g05049 1263 Gene3D - 1008 1259 IPR027417 -
Rops2g05049 1263 Gene3D - 376 640 IPR027417 -
Rops2g05049 1263 FunFam ABC transporter B family member 1 368 617 - -
Rops2g05049 1263 MobiDBLite consensus disorder prediction 628 642 - -
Rops2g05049 1263 Pfam ABC transporter transmembrane region 716 926 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Rops2g05049 1263 Pfam ABC transporter transmembrane region 56 330 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Rops2g05049 1263 Pfam ABC transporter 397 545 IPR003439 GO:0005524
Rops2g05049 1263 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1000 1256 IPR027417 -
Rops2g05049 1263 CDD ABC_MTABC3_MDL1_MDL2 378 616 - -
Rops2g05049 1263 Pfam ABC transporter 1030 1187 IPR003439 GO:0005524
Rops2g05049 1263 FunFam ABC transporter B family member 1 1000 1258 - -
Rops2g05049 1263 FunFam ABC transporter B family member 9 43 374 - -
Rops2g05049 1263 ProSitePatterns ABC transporters family signature. 1159 1173 IPR017871 GO:0005524|GO:0016887
Rops2g05049 1263 SUPERFAMILY ABC transporter transmembrane region 43 363 IPR036640 GO:0005524|GO:0016020
Rops2g05049 1263 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1010 1256 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g05049 Rops-Chr2 90569707 90575100 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g05049 680 1260 Calmodulin-binding Proteins AT2G36910 37.799 2.70e-122 408