Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g05044 ATGGCTTCGGTTGGCGTGGCACCAACATCAGGCTTGAAAGAATCCTGTGGTGTTGATAGATTGCCAGAGGAGATGAATGATATGAAAATTAGAGATGATAAAGAAATGGAAGCCACCGTTGTTGATGGTAATGGAACAGAGATAGGGCATATCATTGTAACTACCATGGGAGGTGGAAATGGTCAGCCGAAGCAAGACATGTCTCCATCAACCCCAACTTTGGAATCAATTATCAAGGATCTTCATGGTTATGAATGGCGCTTTAAGCATATATTTAGAGGTCAGCCACGTAGACAATTGTTCACAACTGGATGGAGTTCTTTAATGACTTCAAAGAGATTTGTTGTTGGAGATAATGTTTTTGAGGTACGCATTTGA 378 0.4101 MASVGVAPTSGLKESCGVDRLPEEMNDMKIRDDKEMEATVVDGNGTEIGHIIVTTMGGGNGQPKQDMSPSTPTLESIIKDLHGYEWRFKHIFRGQPRRQLFTTGWSSLMTSKRFVVGDNVFEVRI* 126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g05044 125 Gene3D - 33 125 IPR015300 -
Rops2g05044 125 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 63 121 IPR044835 GO:0003677|GO:0006355|GO:0009725
Rops2g05044 125 SUPERFAMILY DNA-binding pseudobarrel domain 66 120 IPR015300 -
Rops2g05044 125 Pfam B3 DNA binding domain 75 120 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g05044 Rops-Chr2 90514793 90515588 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g05044 63 124 B3 DNA Binding Superfamily AT2G46530 64.516 1.30e-23 92.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Rops2g05044 B3 2e-08 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g05044 K00924 - twl:120010713 120.168