Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g05036 ATGGAGGCTGAACTTGGAGGAAAGAAACAGTTTATGTATGGACCTGTAGTGTCTGAAATGAAGGATGTTGGGAATGGGAAGAGAAGTTTGGAATGGGATTTGAATGATTGGAAATGGGATGGTGATCTTTTCACTGCTCATCCACTCAATTCAGTGCCATCAGATTGTAGGAGTCGTCAGTTTTTGCCACCTCATCCTGAAATTCCTGCAAGAATTGCTAATTTATCTACCAATTTGTCTGTTTCTATAAACTCAGGGGGGGAAGGAAAGAGAGAATTGGAGAAAAGGAGGAGGGGTGTTAATGGTGAAGGTGAGAGGGAGGAGCTGAATGATGAAGATGGTTCTCTTAATTTGAACCTTGGGGGTCAAGTTTACCCTGTCATGGTGGAAGGAGAAGAAAAAAATGGAAAGAAGACAAAGGTAATTGAGACTACTACTACCACCACCACCACCTCTAACCGTGCTGTGTGTCAGGTACAAGATTGTAGGGCTGATCTTAGTAATGCCAAGGATTATCATCGGAGGCACAAGGTTTGTGAAGTGCATTCTAAGGCAACTAAGGCATTAGTGGGAAATGTTATTCAGCGTTTCTGTCAACAGTGTAGCAGGTTTCATGTTCTTCAAGAGTTTGATGAAGGGAAGAGAAGTTGTCGTAGGCGTCTGGCAGGCCACAATAGGAGGAGGAGGAAAACTCACGCTGATGCTGTAGTTAATGGAGGCTCCCTGAATGATGAAAGGGGCAGTAGCTATCTGTTAATGAGTCTGATACGGATATTGTCCAATATGTGTTCAAATGGTTTAGATCATACAAAGAATGGGGATATTCTCTCTCATCTGCTGAGGAACCTGGCAAGTCTGGCTGGTACAATTAATGGAAGAAGTTTGACCTCCTTATTGGAGGGATCTCAAGGTTTGGTAAATGCTGGAACACCTGGAGTTGTGCATGATGTGCCCAACCTTAACTCAAATGGTCCTGAAGCTTCCAGGCCTTCTGGTTCTTCCATCAAGATGGATAATGGCTTCATTCGTCAGGACCCTCCAAACTCCATGGCGCAGTGTGAGACAGTGCCTGCTTATGGTATGACACATATACCTTCAGGTGTTGGTGGAGTAGGAAATATAAACCCTCCTTCAGGTCCACAGCCCTTGAATTTACTTCTATCAAGGGACATCCTTCCATCTCAAATAACTGCTGCAGAAACTAAAGTTGGAAGGGACAGCTTAAATAACATTGACCTAAATAATGTATACAATGATATGCAGAATACTGTGGAGAATCCTAAGAAGCCTTATCTTCCTGTGGCTTCAGAGATTGGATCTATTGATCATCCTTCATGGTTTCCATGTGACACTCTAAAGTTGAGTCCTCCACAGACAAGTAGAAACTCGGATTCAACCTCTTCCCAATCACCATCTAGTTCCAGTGGAGAAGCTCAGAGTCGCACAGATCGAATAGTTTTTAAACTCTTTGGCAAGGATCCAAATGATTTTCCCCTTGTTCTCCGATCACAGATCCTCAGCTGGTTATCCCACAGTCCCACAGAAATAGAGAGCTATATAAGGCCAGGCTGTATCATATTAACAATTTATCTCCGTCTAGAAAAATCTGCATGGGAGGAGCTCTGCTGTAATCTAGGATCCAGCTTAAGAAAGCTTCTTGCTGCATCAGATGATTCTTTTTGGAAAACAGGATGGGTATATACAAGGGTGCGGCACTCTGTAGCTTTTCTATATAATGGTCAGGTAGTCTTAGACGTGCCCTTGCATTTCAAAAGCCCACAAAATTGTAGGATTTCATGCATTAAACCACTTGCTGTTCCTGCAAGTGCAAAGGCTCACTTTACTGTGAAAGGATTCAACCTTTATCGGTCTAACACAAGATTGCTCTGTGCACTTGAGGGGAAGTATCTAGTGCAGGATAGTTGTCATGATTTGATTGATGGAGCTGATTTAGCTGATGCAGCCATTCAGCTTCTCAGCTTCTCTTGTCAAATACCAAATGTAACTGGGAGGGGGTTCATTGAGGTGGAAGATCATCATGGTCTTAGCAGCTGTTCCTTTCCATTCATAGTCGCGGAGCAAGAAGTTTGTTCAGAAATCTGCAAGCTGGAGAATGTGATTGAGGCAGCTGAGGCCACTAATGGCATCAAGATAAAAAACCAACAAATGGAAGAAAAGACTCAAGCTTTGAATTTCTTACAAGAAATGGGTTGGTTCCTTCATAGAAGTCATTTGAACATTAGGTTAGGTCCTATGGCACCTCCCCATGATCTCTTCCATTTCAATCGGTTCATGTGGCTTGTTGACTTCTCCATGGACCATGGTTGGTGTGCTGTGATGAAAAAACTGTTGGACATTCTATTTGAGGGTGGTGTTGATGCAGGAGAGCATACCTCCATTGAACTTGCATTGTTAGATGCAGGTCTTCTACACAGAGCTGTGAAGAGAAATTGTAGGCCTATGGTGGAACTACTGTTAAAATTTGTGCCAGTTAATACTTCAGATGGTGCAGACAGTAAAGTGAAACAAGTTGAAAAGGTCCCTGACAGATTCTTGTTTAGACCTGATGATACTGTTGGGCCCGGGGGGTTGACTCCTCTTCATGTTGCAGCAAGTATGAATGGCTCAGAAAATGTGTTGGATGCATTAACTGATGATCCAGGAATGGTTGGAATTGAAGCATGGAAAAGTGCCAGGGACAACACAGGTTTGACACCAAATGACTATGCATGCCTTAGGGGCTATTACTCCTACATTCAACTTGTCCAGAAGAAGAGCAGCAAAAAACATGAAAGACAACATGTGCTTGATATCTTCCCTGGTACCCTTGCAGATAGTAACACAAAGCAGAAGCAATCAACATCTAAAGTTTCAAGTTTGCAGACTGAGAAGATTGAATGTGGGCTATGCCATTGCAAGCACAAGCTGGCTTATGGTGGCATGAGAACAGCACTGGTTTATAGGCCTGTCATGCTCTCACTGGTGACCATTGCAGCTGTTTGTGTCTGTGTGGCCTTGCTCTTCAAAAGCTCACCTACTGTTTATTATGTGTTCCAGCCTTTCAACTGGGAATCCTTGGAGTATGGTACAATCTAA 3096 0.4318 MEAELGGKKQFMYGPVVSEMKDVGNGKRSLEWDLNDWKWDGDLFTAHPLNSVPSDCRSRQFLPPHPEIPARIANLSTNLSVSINSGGEGKRELEKRRRGVNGEGEREELNDEDGSLNLNLGGQVYPVMVEGEEKNGKKTKVIETTTTTTTTSNRAVCQVQDCRADLSNAKDYHRRHKVCEVHSKATKALVGNVIQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNRRRRKTHADAVVNGGSLNDERGSSYLLMSLIRILSNMCSNGLDHTKNGDILSHLLRNLASLAGTINGRSLTSLLEGSQGLVNAGTPGVVHDVPNLNSNGPEASRPSGSSIKMDNGFIRQDPPNSMAQCETVPAYGMTHIPSGVGGVGNINPPSGPQPLNLLLSRDILPSQITAAETKVGRDSLNNIDLNNVYNDMQNTVENPKKPYLPVASEIGSIDHPSWFPCDTLKLSPPQTSRNSDSTSSQSPSSSSGEAQSRTDRIVFKLFGKDPNDFPLVLRSQILSWLSHSPTEIESYIRPGCIILTIYLRLEKSAWEELCCNLGSSLRKLLAASDDSFWKTGWVYTRVRHSVAFLYNGQVVLDVPLHFKSPQNCRISCIKPLAVPASAKAHFTVKGFNLYRSNTRLLCALEGKYLVQDSCHDLIDGADLADAAIQLLSFSCQIPNVTGRGFIEVEDHHGLSSCSFPFIVAEQEVCSEICKLENVIEAAEATNGIKIKNQQMEEKTQALNFLQEMGWFLHRSHLNIRLGPMAPPHDLFHFNRFMWLVDFSMDHGWCAVMKKLLDILFEGGVDAGEHTSIELALLDAGLLHRAVKRNCRPMVELLLKFVPVNTSDGADSKVKQVEKVPDRFLFRPDDTVGPGGLTPLHVAASMNGSENVLDALTDDPGMVGIEAWKSARDNTGLTPNDYACLRGYYSYIQLVQKKSSKKHERQHVLDIFPGTLADSNTKQKQSTSKVSSLQTEKIECGLCHCKHKLAYGGMRTALVYRPVMLSLVTIAAVCVCVALLFKSSPTVYYVFQPFNWESLEYGTI* 1032
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g05036 1031 Gene3D - 789 943 IPR036770 -
Rops2g05036 1031 SUPERFAMILY Ankyrin repeat 808 924 IPR036770 -
Rops2g05036 1031 Coils Coil 716 736 - -
Rops2g05036 1031 Pfam SBP domain 157 230 IPR004333 GO:0003677
Rops2g05036 1031 SUPERFAMILY SBT domain 155 236 IPR036893 GO:0003677|GO:0005634
Rops2g05036 1031 FunFam Squamosa promoter-binding-like protein 14 148 218 - -
Rops2g05036 1031 MobiDBLite consensus disorder prediction 83 114 - -
Rops2g05036 1031 MobiDBLite consensus disorder prediction 88 105 - -
Rops2g05036 1031 MobiDBLite consensus disorder prediction 452 480 - -
Rops2g05036 1031 Gene3D - 148 218 IPR036893 GO:0003677|GO:0005634
Rops2g05036 1031 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 95 921 IPR044817 GO:0003677
Rops2g05036 1031 ProSiteProfiles Zinc finger SBP-type profile. 154 231 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g05036 Rops-Chr2 90356349 90362736 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g05036 181 314 SBP-box Gene Family AT2G47070 56.204 1.64e-37 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Rops2g05036 SBP 7.4e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g05036 - - gsj:114419913 1551.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g05036 2 90356349 90362736 Rops2g05036 2 90356349 90362736 ECH
Rops2g05036 2 90356349 90362736 Rops11g01949 11 31468600 31477054 PCT