Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g05029 ATGATGGCTGAGACCAGAAAATTCATTCGAAACCAACAATTAGAGCTTGAAGAGATAATAGGAGAAGCAAAGCATCGTTGGCTTCGACCTGTTGAAATATGCGAGATACTTCGCAATTATCAGAAGTTTGAGTTAACACAAGATCCATCAGTTAGGCCTCCAGCTGGATCGCTATTTTTGTTTGATCGAAAAGCACTTCGATACTTTCGCAAGGATGGTCACCGTTGGAGAAAGAAAAAAGATGGGAAAACTGTAAGAGAAGCTCATGAAAAGTTGAAGGCTGGTAGTGTGGATGTCTTGCATTGTTACTATGCTCATGGTGAGGATAATGAAAACTTTCAACGGAGAAGTTATTGGATGCTTGATGAGCAGTTCGAGCACATTGTCCTTGTGCATTATCGAGAAATTAAAGAGGGCTGCAAGTCTGGCATCTCACATTCGCCTGTAGTTCCAGTAACCCTGGTTGGTAGCTCTCAAAGTAGTTCAGTGCCTTCCTCTACTGAAATAAACTCACCAATATCTGTTGTTCAAACATCTTTGACATCAAGTAAAAATAAAGTTGATCAGAATGGACAAGTTTCAGAGTATGAGGATGTCAAGTTACAGAATGGTCCTCAAGCCTCTTTTCTTGCTCAACCTATCAGTAATTCCATGCCTCAAAGTGCATCTCAGCTTGCACATGAAGCCACTGCATCTTCTCTTCCTGGTATCGGCTTGTCTCCCTGGGCATTAATTCAAAACTCTAGAGGAAACACAGTTAATATGTATGATAGAGAACTTCATGTTGAAGGATCCATTGAAGCCCCTGAAGTCGACTTCACTGTTCATAATCTAAGTGATGCAAGGTTAGATGCAGTTTGCAGAATGCAGGATGGTATAATTTTCAGAGATGACATGTATATCCAGCCAATTACAGGAGCTTCACAGACAGTTAATCAGCAGGTGCAAAAGGAGCATGGTCTAGGTTCATTTCATGCCCAATTCCGTGATCATACTGATCATCCAGTTGTTGCAACTACTACAAACCTAGTTGAACAAAAACTTCAAGATGGTGATACAGACAAAAATGAGTCAGAACATGTTGAATCTGGGGAATTGAAGAAGCTCGATAGTTTTGGAAGGTGGATGGATAAGGAGATTGGTGGAGACTGTGATAATTCCTTGATGGCTTCAGATTCTGGCAATTATTGGAGTACGCTTGATGATCATAATGAGGATAAGGAGGTGTCTAGTTTACGCCACATGCAGTTGGATATGGATTCATTGGGCCCTTCTCTAGCCCAAGAACAACTATTTAGTATCCATGACTTTTCTCCAGATTGGGCATATGCTGGGGTTAGCACGAAGGTTTTAATAGTTGGCACATTTCTGGGGAGTAAAAAGCTTTCTAGTGAGACAAAATGGGGATGTATGTTTGGTGAAATTGAGGTTTTTGCTGAAGTTTTGGCAGAGAATGTCATACGGTGTCAGACTCCTTTGCATTTACCTGGTCGTGTTCCATTCTATATTACCTGCAGTAATAGGTTAGCCTGCAGCGAGGTCAGAGAATTTGAATATCATGAAAATCCAACTAAATTTTTAGGTCCTTGGGGCATTAAAATCTCTCAAAAAGATGAGGTACGGCTTCAAACACAACTTCTTAAACTAGTAGAATTGGGACCTGACAAGAAGTGGTTGAAGTGCTCTGTTCCTGAATGTGAAAAATGTAAACTTAAGGGAACAATATATTCCATGAGAGATGATAGTGGAGTATTTGAAGAAACTTTCCAGATTGATGGCAGTGATCCGATAAACCCTAGGGGTGTGTTGTTTCAGAGATTAATGAGAGACAAGCTTTATGAGTGGTTGGTATTTAAGGTTCACGAAGGAGAAAAAGGACCACATGTGTTGGATAATGAAGGCCAAGGAGTAATACATTTGGCATCTGCTCTTGGTTATGCATGGGCTATGGGCCCATTAATAGCTGCTGGTATCAGTCCTAACTTTAGAGACGTTCATGGAAGAACAGGCCTTCACTGGGCATCATATTTTGGGAGAGAAGAAACTGTGATTGCGCTAGTCAAATTAGGTGCAGCCCCAGGTGCCGTCGAGGATCCAACATCAGCATTTCCTCGAGGACGAAAAGCAGCCGATTTAGCTTCAATTAGAGGACATAAAGGCCTTGCTGGGTATTTGGCTGAGGCAGATCTGACAAGCCAGTTATCTATGTTGACTGTCAATGAAAATGAGATGTACAACATTGCCACAACCACAGCAGCTGACAGTGCTTTTGAGTCTGCTGAAGGTGACTCATCTAATATGAGGATGGATGAGCAACGCTGTCTGAGAGAGTCACTTGCCGCTTTTAGAAAATCAGCTCATGCAGCTGCCTCAATCCAAGCAGCCTTTAGAGCAAGATCATTCTGTCAGAGACAATTAGCCAAAAGTAGCAGCAATATTTCTGATGCAGTACCTGACCTAGTATCTGATTCTTTGAACAAGGTTCAGAAGATGGGTCACTTTGAGGATTATTTGCATTTTGCAGCTTTAAGGATTCAAAAGAGATATCGTGGGTGGAAAGGAAGAAAAGATTTTTTGAAAATACGCAATCGCATTGTAAATATTCAGGCTCATATTAGAGGACACCAAGTTCGTAAGCAGTACAAAAAAGTTGTTTGGTCTGTTAGCATTGTGGAAAAGGTAATACTGCGTTGGAGACGGAAAGGAGCTGGTCTGCGAGGATTCCGGGTTGGGCAGCCAGTTGACATGGTGGCAGAAGACGCTGAGAAAAGTGATGAGTATGAATTTCTTAGCATTGGGAGGAGACAGAAATCAGATGATGTCAAGAAAGCTCTGGATAGAGTTAAGTCCATGGTTCATAACCCAGAGGCCCGTGATCAATATATGAGGCTCATCATGAAGTATCAGAATTTTAAGATTGATGATGGCGGAAGCAGTCAATCACAGCAGTCAAATGTTCTGTTACGTGCAAAGGTTGCTGGGATTGCCTACAGTTTCATGCATGCTCTGGAGGTCCTAGACCTGGAAGTTTAA 3033 0.4181 MMAETRKFIRNQQLELEEIIGEAKHRWLRPVEICEILRNYQKFELTQDPSVRPPAGSLFLFDRKALRYFRKDGHRWRKKKDGKTVREAHEKLKAGSVDVLHCYYAHGEDNENFQRRSYWMLDEQFEHIVLVHYREIKEGCKSGISHSPVVPVTLVGSSQSSSVPSSTEINSPISVVQTSLTSSKNKVDQNGQVSEYEDVKLQNGPQASFLAQPISNSMPQSASQLAHEATASSLPGIGLSPWALIQNSRGNTVNMYDRELHVEGSIEAPEVDFTVHNLSDARLDAVCRMQDGIIFRDDMYIQPITGASQTVNQQVQKEHGLGSFHAQFRDHTDHPVVATTTNLVEQKLQDGDTDKNESEHVESGELKKLDSFGRWMDKEIGGDCDNSLMASDSGNYWSTLDDHNEDKEVSSLRHMQLDMDSLGPSLAQEQLFSIHDFSPDWAYAGVSTKVLIVGTFLGSKKLSSETKWGCMFGEIEVFAEVLAENVIRCQTPLHLPGRVPFYITCSNRLACSEVREFEYHENPTKFLGPWGIKISQKDEVRLQTQLLKLVELGPDKKWLKCSVPECEKCKLKGTIYSMRDDSGVFEETFQIDGSDPINPRGVLFQRLMRDKLYEWLVFKVHEGEKGPHVLDNEGQGVIHLASALGYAWAMGPLIAAGISPNFRDVHGRTGLHWASYFGREETVIALVKLGAAPGAVEDPTSAFPRGRKAADLASIRGHKGLAGYLAEADLTSQLSMLTVNENEMYNIATTTAADSAFESAEGDSSNMRMDEQRCLRESLAAFRKSAHAAASIQAAFRARSFCQRQLAKSSSNISDAVPDLVSDSLNKVQKMGHFEDYLHFAALRIQKRYRGWKGRKDFLKIRNRIVNIQAHIRGHQVRKQYKKVVWSVSIVEKVILRWRRKGAGLRGFRVGQPVDMVAEDAEKSDEYEFLSIGRRQKSDDVKKALDRVKSMVHNPEARDQYMRLIMKYQNFKIDDGGSSQSQQSNVLLRAKVAGIAYSFMHALEVLDLEV* 1011
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g05029 1010 Pfam IQ calmodulin-binding motif 841 858 IPR000048 GO:0005515
Rops2g05029 1010 Pfam IQ calmodulin-binding motif 864 882 IPR000048 GO:0005515
Rops2g05029 1010 ProSiteProfiles CG-1 DNA-binding domain profile. 16 142 IPR005559 GO:0003677
Rops2g05029 1010 ProSiteProfiles Ankyrin repeat profile. 666 698 IPR002110 GO:0005515
Rops2g05029 1010 SMART iq_5 837 859 IPR000048 GO:0005515
Rops2g05029 1010 SMART iq_5 860 882 IPR000048 GO:0005515
Rops2g05029 1010 SMART iq_5 784 808 IPR000048 GO:0005515
Rops2g05029 1010 Pfam IPT/TIG domain 434 519 IPR002909 -
Rops2g05029 1010 FunFam Calmodulin-binding transcription activator 2 427 524 - -
Rops2g05029 1010 Pfam CG-1 domain 22 135 IPR005559 GO:0003677
Rops2g05029 1010 SUPERFAMILY E set domains 434 519 IPR014756 -
Rops2g05029 1010 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 16 971 - -
Rops2g05029 1010 Gene3D - 836 885 - -
Rops2g05029 1010 FunFam Calmodulin-binding transcription activator 2 837 885 - -
Rops2g05029 1010 ProSiteProfiles IQ motif profile. 861 889 IPR000048 GO:0005515
Rops2g05029 1010 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 833 888 IPR027417 -
Rops2g05029 1010 Gene3D - 613 820 IPR036770 -
Rops2g05029 1010 CDD IPT 433 521 - -
Rops2g05029 1010 SUPERFAMILY Ankyrin repeat 626 728 IPR036770 -
Rops2g05029 1010 Gene3D Immunoglobulins 427 525 IPR013783 -
Rops2g05029 1010 ProSiteProfiles IQ motif profile. 838 867 IPR000048 GO:0005515
Rops2g05029 1010 ProSiteProfiles Ankyrin repeat region circular profile. 666 691 - -
Rops2g05029 1010 SMART CG_1_2 19 137 IPR005559 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g05029 Rops-Chr2 90254191 90264388 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g05029 60 965 CAMTA Transcription Factor Family AT2G22300 39.157 0.0 598
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Rops2g05029 CG-1 1.5e-49 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g05029 K21596 - gmx:100818336 1548.49
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g05029 2 90254191 90264388 Rops2g05029 2 90254191 90264388 ECH