Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g05016 ATGGTAGCAGAAGCGGAAATTATCTGTCAGCAAACCATTTCAATGTTGGATGTGAAGTATCACCTTTGCGTGGCACAAGAACACAACGCTAAGGTTGAGGTTTCACCCACCTCACCTTCCCCATCTGTCCCGATCTTTGGCCAAGCTGTGAGTTGCTCTGAGATCATTAAAGATTCCATTTTGGTGGAGACCCCTGCAAAGAGTTTTGTTCCAAATGTGCGTTCTGGTAGCTGTGCTGAAATTGGACCGCGGGGATCTATGGATGATGAACACATTCGGATAGATGATCTAGCTGGCTACCTTGGGTTTGTGTTTAGGTACCCAATACCAAGTGCATTTTATGCAGTTTTTGATGGGCATGGAGGGCCTGAAGCAGCTGCTTTTGTTAAGAGGAATGCTATGAGATTATTTTTTGAAGATGCTGACATGCTGCAATCTTATGATACTGATCAATTTTTTCTAAAGAAGTTGGAGGATTCTCATCGGAGAGCTTTTCTACGGGCAGATCTTGCCTTGGCCGATGAACAAAGTGTTAGTAGTTCATGTGGGACTACAGCATTGACTGCCCTTGTACTTGGAAGGCATTTGCTTGTTGCTAATGCTGGTGACTGTCGAGCAGTTCTTTGCAGGAGAGGTGCAGCTGTCGAGATGTCTCAAGATCATAGGCCAAGCTATTTACCAGAACGTAGGAGAGTGGAGGAGTTAGGTGGCTTCATCGACGATGGGTATCTCAATGGTTATCTTTCTGTAACTCGTGCCCTTGGGGATTGGGACATGAAATTTCCACTCGGTGCTGCATCTCCTCTCATTGCTGACCCTGATGTTCAACTGGTTACATTGACAGAGGATGATGAGTTCTTGATCATTGGGTGTGATGGGATTTGGGATGTAATGTCTAGCCAAGTTGCAGTTAGTCTTGTTCGTCGTGGATTAAGAAGGCATAATGACCCACAACAATGTGCCAGAGAACTAGTCAAGGAAGCATTGCGCCTCAATACATCAGATAATCTCACTGTGATTGTTATATGTTTGTCCTCCATAGAAAACATTGTGGAATCTTGTCCGCCCCAAAGGCGAAGATTCAAAGCGTGCAGCCTGTCTGAAGAGGCCCGTAATAGATTGAAGAGCTTGATCGAGGGAAAATGA 1146 0.4511 MVAEAEIICQQTISMLDVKYHLCVAQEHNAKVEVSPTSPSPSVPIFGQAVSCSEIIKDSILVETPAKSFVPNVRSGSCAEIGPRGSMDDEHIRIDDLAGYLGFVFRYPIPSAFYAVFDGHGGPEAAAFVKRNAMRLFFEDADMLQSYDTDQFFLKKLEDSHRRAFLRADLALADEQSVSSSCGTTALTALVLGRHLLVANAGDCRAVLCRRGAAVEMSQDHRPSYLPERRRVEELGGFIDDGYLNGYLSVTRALGDWDMKFPLGAASPLIADPDVQLVTLTEDDEFLIIGCDGIWDVMSSQVAVSLVRRGLRRHNDPQQCARELVKEALRLNTSDNLTVIVICLSSIENIVESCPPQRRRFKACSLSEEARNRLKSLIEGK* 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g05016 381 PANTHER PROTEIN PHOSPHATASE 2C 64 342 IPR015655 GO:0004722|GO:0006470
Rops2g05016 381 Pfam Protein phosphatase 2C 81 336 IPR001932 -
Rops2g05016 381 FunFam Probable protein phosphatase 2C 22 59 347 - -
Rops2g05016 381 SUPERFAMILY PP2C-like 67 346 IPR036457 -
Rops2g05016 381 ProSitePatterns PPM-type phosphatase domain signature. 113 121 IPR000222 GO:0043169
Rops2g05016 381 SMART PP2C_4 64 342 IPR001932 -
Rops2g05016 381 SMART PP2C_SIG_2 89 344 IPR001932 -
Rops2g05016 381 CDD PP2Cc 73 344 IPR001932 -
Rops2g05016 381 Gene3D - 59 349 IPR036457 -
Rops2g05016 381 ProSiteProfiles PPM-type phosphatase domain profile. 74 344 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g05016 Rops-Chr2 89996180 89998316 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g05016 1 381 PP2C-type Phosphatase Gene Family AT1G48040 57.107 1.92e-148 423
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBP Rops2g05016 PP2C 3.3e-64 CL0238
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g05016 K14803 - gmx:100775577 672.159
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g05016 2 89996180 89998316 Rops2g05016 2 89996180 89998316 ECH
Rops2g05016 2 89996180 89998316 Rops11g01407 11 20820257 20822439 PCT