Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g05010 ATGGATGTAAATGGAAGAGGAAGCAACACAACCATGTTGAGTGAAGATGAGATGGACCTTAGAAGAGGTCCTTGGACTATGGAAGAGGACTGTACCCTCATCAATTACATTGCCACTCATGGTGAAGGTCGCTGGAACACCCTTTCCCTCTCTGCTGGCCTAAAACGAACAGGCAAGAGTTGCAGATTGAGGTGGCTAAACTATCTTCGCCCTGATGTTCGACGTGGAAATATCACACTTGAAGAACAACTCTTGATTCTTGAACTCCACAATCGTTGGGGAAACAGATGGTCTAAAATTGCCCAATATCTACCTGGTAGAACTGATAATGAGATCAAGAACTATTGGAGAACCCGTGTTCAAAAACTTGCCAAACAACTCAAATGTGACGTGAATAGCAAGCAATTCAAGGACAGCATGCGTTATGTTTGGATGCCAAGGCTTGTGGAAAGCATTCAAGCAGCTTCAAGTTCCCAAACTTTATCTACCACAACAACAACAACCACTGTCACCACCAATAACACATACAACAACAACACCAACAATTTCGAAGGGAAAATGGGGTTGACACCTTCAGTTATGAACAATGATTTCATGGGTTCACATGTTACACGAAGTTATACCCCAGAAAACAGTAGCACAGCTGCATCATCAGACTCATTTGGGACTCAAGTTTCAGATATAACTGATTATTACAGTAATGGTAACCCTAATCATGCTGCAGATTATTATCAACCCTCTCAAATTTGCTACTCTGATTGCATCACAAGCCCTTCTGGGGTGTTCCCTCATGGACTGGATTTTCAAGCCATGGAGCCAAACACACCATGGATGCAAAGTGGGGACTCATCAGACAATTTTTGGAATGCTGAAAACATGTTGTTTTTACAGCAGCAACTCATGAATGATAACAAGTGA 918 0.4227 MDVNGRGSNTTMLSEDEMDLRRGPWTMEEDCTLINYIATHGEGRWNTLSLSAGLKRTGKSCRLRWLNYLRPDVRRGNITLEEQLLILELHNRWGNRWSKIAQYLPGRTDNEIKNYWRTRVQKLAKQLKCDVNSKQFKDSMRYVWMPRLVESIQAASSSQTLSTTTTTTTVTTNNTYNNNTNNFEGKMGLTPSVMNNDFMGSHVTRSYTPENSSTAASSDSFGTQVSDITDYYSNGNPNHAADYYQPSQICYSDCITSPSGVFPHGLDFQAMEPNTPWMQSGDSSDNFWNAENMLFLQQQLMNDNK* 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g05010 305 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 70 124 IPR017930 -
Rops2g05010 305 Pfam Myb-like DNA-binding domain 22 69 IPR001005 -
Rops2g05010 305 Pfam Myb-like DNA-binding domain 75 118 IPR001005 -
Rops2g05010 305 CDD SANT 24 69 IPR001005 -
Rops2g05010 305 CDD SANT 90 118 IPR001005 -
Rops2g05010 305 ProSiteProfiles Myb-like domain profile. 70 120 IPR001005 -
Rops2g05010 305 ProSiteProfiles Myb-like domain profile. 17 69 IPR001005 -
Rops2g05010 305 SMART sant 21 71 IPR001005 -
Rops2g05010 305 SMART sant 74 122 IPR001005 -
Rops2g05010 305 MobiDBLite consensus disorder prediction 160 183 - -
Rops2g05010 305 SUPERFAMILY Homeodomain-like 19 116 IPR009057 -
Rops2g05010 305 Gene3D - 79 143 - -
Rops2g05010 305 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 16 201 IPR044676 GO:0003700|GO:0006355|GO:0043565
Rops2g05010 305 FunFam Myb transcription factor 22 74 - -
Rops2g05010 305 Gene3D - 19 75 - -
Rops2g05010 305 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 17 69 IPR017930 -
Rops2g05010 305 FunFam MYB transcription factor 79 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g05010 Rops-Chr2 89917089 89919025 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g05010 1 289 MYB Transcription Factor Family AT3G06490 56.962 5.19e-89 267
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Rops2g05010 Myb_DNA-binding 1.9e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g05010 K09422 - gmx:100791349 468.774