Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g04985 ATGAATAACCGTCGAAGCCCCGCTGGTTTTCGCTCCGGCGGCCCTCCTTTCCACCGCGGCTTTGATAGTCCCCCGCGTCGGTCTCCTCCCGCTCGTGGTGGTGGCTTCCGGCAATTCCCTGGCGGGGAAGGGTTCAGGCCAATGGGTGGTGGTGAGGGTCCTGGGGATTTTGGATTTCAGCCACCGCCGCTGTCTGGTCAGAAACGAGGGTTTCCTTTCTCTGCACGCGGAGGAGGGTCTTCACCTGATCACTTTGATGGCGGGAATTTTGCCAAACTTTTTGTTGGATCTGTTCCCCGAACAGCCACTGAAGAAAATATTCGCCCTTTGTTTGAGGAGCATGGGAATGTGATTGAGGTTGCACTGATCAAAGATAGAAAGACAGGACAGCATCAAGGTTGTTGTTTCATAAAATATGCTACCTCTGAAGAAGCTGATCAGGCAATTAGAGCATTGCACAATCAACATACTCTTCCTGGAGGTGTTGGTCCCATCCAAGTGCGGTATGCTGATGGTGAACGGGAACGCCTCGGTGCAGTTGAGTACAAGTTGTTTGTGGGATCCCTGAACAAACAGGCTACAGTAAAGGAAGTTGAGGAAATTTTCTCAAAATATGGGCGGGTTGAAGATGTTTATCTCATGCGTGATGAGAAGAAGCAAAGCCGTGGATGTGGTTTTGTTAAATACTCGCATAGAGATATGGCACTGGCAGCTATCAATGCACTTAATGGAATCTATACAATGAGAGGTTGTGATCAACCATTAATTGTTCGGTTTGCTGATCCTAAGAAACCTCGTCAAGGAGATTCCAGGGGTCCTGCATTTGGAGGTCCAGGATTTGGTCCTAGATATGATGCACCAGGCACAAGACTTCCATCCAATATTTCTGATCCTATGGGTGATCGTATGCCTCCCCCTAATGCCTGGCGTCCAATGCATCCACCAAATATGGGGCCATCCTCTAATGCTGGTTTTCATGGCATGGGGCCTCCATTGCTTCCAAGATCTGGTGACATGGCGTTGCCTATGAATGCAGGTGGTCCTATGACTGGCATGGGAGTCCCCACAGATAGTCGTTTTCAAGCTCAGTCTCTTTCATCAATGCCACAACAGAATTTCAACCAGCCTCTACCGCAAATTCCACCAGTCAATCAGTCAATATCACCAATGCAGAAACCTATTCAATCATCTCAGGAGTTGCCACCTTCCCACCAGTTGTATCCTCAAGCTCCAGTGCCCTACCAACAAACATCAACACTTTCTTCTCTTAGGCAGCACGGTCAGCCACAACTTCCTCTTTCCGGTGGTCCTCTCCCATCGCAGCAGGGACTTGGCATAAGTGGACAGTTTCCAACTTCTCAGCCCCAAACACAGCAGAGTGCTTTGTCTGCTACAATTCCTCATACCCCTCTTGATACTGGCATTCAATCTAATACTGCATTGACTACTCCAAACCAACAGCAAGTTCCTCCCTCTATGCAGCAGCAGCCACTTCAACCTCTTCAGCAATCCCCTTCTCAGTTGGCTCAGATGTTGTCACAACAAACACAGAATTTACAAGCAAGCTTTCATTCATCTCAGCAGGCGTTTTCCCAGCTTCAACAACAATTACAGATGATACAACCATCTAGTCAAGCATTAATGTTGCAGCAAAATGCAGAAGCTATTAAAAAGCAGTCTCAATGGGCTGGGACTGTAGCGCAGCCGGTGACCGGCACTCATGTGGCTGCACCAGCTGCAGATGTGCCTTCATCCACATCGGCTATTTCTGCTGTACCAGCAATAAGCCAGAACACGACTCTTGCAAAATGTAATTGGACAGAACATATATCTCCTGAGGGCTTCAAGTACTACTATAATAGCGTCACTGGGGAAAGTCGGTGGGAGAAACCTGAGGAGTTGACATTATTGGAACAGCAAAAGCAACAGCAGAGGCCAACTGTTCTGCAGTCTCAAACTCAGTCACAGCCTTCAATACTATCCGCCCAGCAAGGTACACAAATCCAACAGGTTCAGCCTCAAAGCCTTCTCCGAGGACAGGTTCTCCACCAGCAACAAATACAGCAGCCTTCTTTGTCTTCTTCATTCCAGGCATATGGAATTACAGGTCATCAAAATGTTCAGGAAGTTGGTTATAAACAGTTACAGGCATCAGTTATTTCTGCTGGTGATCCTGGACACTACTCACAGGGTATTAATGCTCCACAAGAATTGATTTGGAAAAATAGACCCGCAGGAATTTGA 2244 0.4773 MNNRRSPAGFRSGGPPFHRGFDSPPRRSPPARGGGFRQFPGGEGFRPMGGGEGPGDFGFQPPPLSGQKRGFPFSARGGGSSPDHFDGGNFAKLFVGSVPRTATEENIRPLFEEHGNVIEVALIKDRKTGQHQGCCFIKYATSEEADQAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATVKEVEEIFSKYGRVEDVYLMRDEKKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLIVRFADPKKPRQGDSRGPAFGGPGFGPRYDAPGTRLPSNISDPMGDRMPPPNAWRPMHPPNMGPSSNAGFHGMGPPLLPRSGDMALPMNAGGPMTGMGVPTDSRFQAQSLSSMPQQNFNQPLPQIPPVNQSISPMQKPIQSSQELPPSHQLYPQAPVPYQQTSTLSSLRQHGQPQLPLSGGPLPSQQGLGISGQFPTSQPQTQQSALSATIPHTPLDTGIQSNTALTTPNQQQVPPSMQQQPLQPLQQSPSQLAQMLSQQTQNLQASFHSSQQAFSQLQQQLQMIQPSSQALMLQQNAEAIKKQSQWAGTVAQPVTGTHVAAPAADVPSSTSAISAVPAISQNTTLAKCNWTEHISPEGFKYYYNSVTGESRWEKPEELTLLEQQKQQQRPTVLQSQTQSQPSILSAQQGTQIQQVQPQSLLRGQVLHQQQIQQPSLSSSFQAYGITGHQNVQEVGYKQLQASVISAGDPGHYSQGINAPQELIWKNRPAGI* 748
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g04985 747 CDD WW 603 633 IPR001202 GO:0005515
Rops2g04985 747 Gene3D - 177 270 IPR012677 -
Rops2g04985 747 ProSiteProfiles WW/rsp5/WWP domain profile. 606 633 IPR001202 GO:0005515
Rops2g04985 747 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 182 262 IPR000504 GO:0003723
Rops2g04985 747 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 184 250 IPR000504 GO:0003723
Rops2g04985 747 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 93 156 IPR000504 GO:0003723
Rops2g04985 747 SUPERFAMILY RNA-binding domain, RBD 182 285 IPR035979 GO:0003676
Rops2g04985 747 SMART rrm1_1 183 258 IPR000504 GO:0003723
Rops2g04985 747 SMART rrm1_1 92 168 IPR000504 GO:0003723
Rops2g04985 747 MobiDBLite consensus disorder prediction 639 665 - -
Rops2g04985 747 Pfam WW domain 605 631 IPR001202 GO:0005515
Rops2g04985 747 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 91 172 IPR000504 GO:0003723
Rops2g04985 747 SUPERFAMILY RNA-binding domain, RBD 74 176 IPR035979 GO:0003676
Rops2g04985 747 MobiDBLite consensus disorder prediction 1 85 - -
Rops2g04985 747 FunFam flowering time control protein FCA isoform X2 85 177 - -
Rops2g04985 747 Gene3D - 86 176 IPR012677 -
Rops2g04985 747 PANTHER RNA BINDING PROTEIN 74 512 - -
Rops2g04985 747 ProSitePatterns WW/rsp5/WWP domain signature. 606 631 IPR001202 GO:0005515
Rops2g04985 747 SUPERFAMILY WW domain 605 637 IPR036020 GO:0005515
Rops2g04985 747 FunFam Flowering time control protein FCA 178 268 - -
Rops2g04985 747 Gene3D - 600 649 - -
Rops2g04985 747 MobiDBLite consensus disorder prediction 363 508 - -
Rops2g04985 747 SMART ww_5 601 633 IPR001202 GO:0005515
Rops2g04985 747 MobiDBLite consensus disorder prediction 262 332 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g04985 Rops-Chr2 89632622 89632924 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g04985 86 283 Eukaryotic Initiation Factors Gene Family AT2G23350 25.909 6.84e-13 70.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g04985 - - gmx:100798390 1090.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g04985 2 89632622 89632924 Rops2g04985 2 89632622 89632924 ECH