Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Rops2g04978 | ATGGAAGGTGGAAATCCCTCATCAACACCCGATCCCGAATCGCCGACGTCTCCTTCTGCTGGTTTCAACACTGATCAGCTTCCTCACACTCACACCAGTCGTGCCTCTGAAGACGATGAGGCCTCCGTTGATCCCGATATCATACGAGACGAACCCGATGATGAACAACCCGAAGAAGACGAAGATGGAGAGGATCTTTACAATGACAACTTCCTGGATGATTATAGAAGGATGGAGGAGGCTGACCAGTTCGAATCAATTGGACTTGATGACTCGTTGGAAGATGAGAGGGATTTTGATCAGATCATGGAAGATCGTAGGGCTGCTGAGAGGGAACTTGAGACACGTGATGGTCGCGTTTCCAATCGTAGCAAACTCCCTCAGCTTCTGCACGACCAGGATACAGATGATGACAGCTACAGGCCTTCTAAAAGGGCCCGAGCCGATTTCAGGGCTCCTATACCAAGTGATGATGATCTTGATGGGACGCAGAGTTCACCTGGAAGGTCACAACGAGGACACTCAAGAGAGGATGTTCCAATGACTGATCAAACCGAGGATGATCGAGATGATGATGAATATGATGAAGAAGGTGAGTATGAGATGTACCGTGTTCAAGGAACACTTAGAGAGTGGGTTACAAGAGACGAAGTTCGCCGATTCATAGCCAGGAAATTCAAGGATTTCTTACTCTCATATGTTGATCCAAAAAATAAACATAATGACCATGAATATGTGCGCCTGATAAATGAGATGGTGTCAGCTAATAAGTGCAGTTTGGAGATAGATTACAAACAATTTATCTACGTCCATCCCAACATTGCCATTTGGCTGGCTGATGCACCTCAGTCTGTTTTAGAAGTAATGGAAGATGTTTCCAAAAGCGTTGTCTTTCAATTACATCCAAATTACAGAAATATTCATCAAAAGATTTATGTTCGCATAACCAACTTACCGGTTTATGATCAGATTCGAAATATTAGGCAGATCCACTTGAATACAATGATCCGAATTGGGGGAGTAGTAACCAGACGCTCCGGAGTTTTCCCCCAGCTGCAACAAGTGAAGTATGACTGTAGTAAATGTGGGGCAATTTTGGGACCTTTTTTTCAGAATTCCTATTCTGAGGTGAAAGTTGGATCTTGTCCTGAGTGTCAATCGAAAGGCCCATTCACTGTCAATGTTGAGCAGACAATTTACAGGAATTTTCAAAAGCTTACTCTCCAAGAGAGCCCAGGCATAGTTCCTGCTGGTAGACTTCCAAGATACAAGGAAGTGATACTATTGAATGATCTGATTGACTGTGCTCGCCCCGGGGAAGAAATTGAGGTCACAGGTATTTATACCAATAACTTCGACTTATCCCTAAACACAAAGAATGGCTTTCCAGTGTTTGCCACTGTTGTTGAGGCAAATTATGTTACGAAGAAGCAAGATCTCTTCTCTTCCTACAAACTTACACAGGAAGACAGAGAAGAGATTGAAAAATTAGGCAGAGACCCTCGAATTGGAGAAAGGATTATCAAGTCTATTGCTCCATCAATCTATGGTCATGAGGACATAAAAACTGCAATAGCTTTAGCTATGTTCGGAGGTCAAGAAAAAAATGTTGAAGGAAAGCATCGACTGCGAGGAGACATTAATGTTCTTCTTCTCGGTGATCCAGGAACAGCAAAGTCTCAATTTCTCAAGTACGTCGAAAAAACTGGGCAGAGAGCTGTATACACTACTGGCAAAGGGGCTTCTGCTGTGGGTCTCACAGCTGCAGTTCACAAGGATCCAGTCACAAGGGAGTGGACTCTTGAGGGGGGAGCCCTTGTTCTAGCCGACAAAGGAATTTGTCTTATTGACGAGTTTGACAAGATGAATGACCAGGATAGGGTAAGTATCCATGAAGCCATGGAGCAGCAGAGCATAAGCATATCAAAAGCGGGAATTGTCACATCTCTTCAGGCACGCTGTTCTGTCATTGCTGCCGCAAATCCTATTGGAGGAAGATATGATTCCTCAAAAGCATTTTCTCAAAATGTTGAATTGACGGATCCTATTATTTCTCGTTTTGACATCCTCTGCGTTGTGAAGGATGTGGTTGATCCGGTCACTGATGAAATGCTTGCAAAATTTGTAGTTGACAGTCACTTCAAGTCACGACCAAAGGGTGCTAACAAAGATGATAAATCTTTGAGCGAGTCCCATGATGCATATTCATCTGCCATGCCAGCAGATGAGATACTTCCTCAAGAGCTGCTGAAGAAGTACATTACATATGCCAAATTGAATGTTTTTCCAAGGTTACATGATACTGATATGGATAAAGTGACACATGTATACGCCGAACTGCGGAAGGAATCTTCGCAAGGACAAGGAGTCCCCATTGCTGTAAGGCACATTGAATCAATGATAAGGATGTCTGAAGCTCATGCGAGAATGCATCTCCGACAGCATGTCATACAAGAGGATGTGGACATGGCAATTCGAGTTCTGCTTGATTCATTCATTTCAACCCAAAAATTTGGGGTGCAGAAAGCGCTGCAGAAGAGCTTTAGAAAGTACATGACTTTCAAGAAGGACTATAATGAATTGCTCCTTTATCTTCTCCGTGAGCTTGTAAAGAATGCTTTGCATTTCGAAGAAATTGTCACCGGATCTGCTTCAGGTCTAACACATGTAGATGTCAAAGTAGATGATCTCCGCAACAAGGCTGAAGAGCATGAAATATATGATCTGAAACCCTTCTTCAGTAGCAGCCACTTTTCCAATGCCAATTTTGTATTGGATGAAGAACGACAAGTGATCAGACACCACCTTGCTAGGTGA | 2817 | 0.4327 | MEGGNPSSTPDPESPTSPSAGFNTDQLPHTHTSRASEDDEASVDPDIIRDEPDDEQPEEDEDGEDLYNDNFLDDYRRMEEADQFESIGLDDSLEDERDFDQIMEDRRAAERELETRDGRVSNRSKLPQLLHDQDTDDDSYRPSKRARADFRAPIPSDDDLDGTQSSPGRSQRGHSREDVPMTDQTEDDRDDDEYDEEGEYEMYRVQGTLREWVTRDEVRRFIARKFKDFLLSYVDPKNKHNDHEYVRLINEMVSANKCSLEIDYKQFIYVHPNIAIWLADAPQSVLEVMEDVSKSVVFQLHPNYRNIHQKIYVRITNLPVYDQIRNIRQIHLNTMIRIGGVVTRRSGVFPQLQQVKYDCSKCGAILGPFFQNSYSEVKVGSCPECQSKGPFTVNVEQTIYRNFQKLTLQESPGIVPAGRLPRYKEVILLNDLIDCARPGEEIEVTGIYTNNFDLSLNTKNGFPVFATVVEANYVTKKQDLFSSYKLTQEDREEIEKLGRDPRIGERIIKSIAPSIYGHEDIKTAIALAMFGGQEKNVEGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTGQRAVYTTGKGASAVGLTAAVHKDPVTREWTLEGGALVLADKGICLIDEFDKMNDQDRVSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPIGGRYDSSKAFSQNVELTDPIISRFDILCVVKDVVDPVTDEMLAKFVVDSHFKSRPKGANKDDKSLSESHDAYSSAMPADEILPQELLKKYITYAKLNVFPRLHDTDMDKVTHVYAELRKESSQGQGVPIAVRHIESMIRMSEAHARMHLRQHVIQEDVDMAIRVLLDSFISTQKFGVQKALQKSFRKYMTFKKDYNELLLYLLRELVKNALHFEEIVTGSASGLTHVDVKVDDLRNKAEEHEIYDLKPFFSSSHFSNANFVLDEERQVIRHHLAR* | 939 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Rops2g04978 | 938 | MobiDBLite | consensus disorder prediction | 43 | 68 | - | - | |
| Rops2g04978 | 938 | FunFam | DNA helicase | 483 | 855 | - | - | |
| Rops2g04978 | 938 | MobiDBLite | consensus disorder prediction | 184 | 199 | - | - | |
| Rops2g04978 | 938 | Pfam | Mini-chromosome maintenance protein 2 | 38 | 188 | IPR008045 | GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775 | |
| Rops2g04978 | 938 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 604 | 618 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Rops2g04978 | 938 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 683 | 691 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Rops2g04978 | 938 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 544 | 559 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Rops2g04978 | 938 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 656 | 668 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Rops2g04978 | 938 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 632 | 645 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Rops2g04978 | 938 | ProSiteProfiles | MCM family domain profile. | 503 | 709 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Rops2g04978 | 938 | FunFam | DNA helicase | 351 | 401 | - | - | |
| Rops2g04978 | 938 | MobiDBLite | consensus disorder prediction | 129 | 156 | - | - | |
| Rops2g04978 | 938 | MobiDBLite | consensus disorder prediction | 69 | 84 | - | - | |
| Rops2g04978 | 938 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 513 | 835 | IPR027417 | - | |
| Rops2g04978 | 938 | Gene3D | - | 324 | 449 | IPR012340 | - | |
| Rops2g04978 | 938 | Pfam | MCM AAA-lid domain | 748 | 832 | IPR041562 | - | |
| Rops2g04978 | 938 | Gene3D | - | 351 | 401 | - | - | |
| Rops2g04978 | 938 | SUPERFAMILY | Nucleic acid-binding proteins | 225 | 472 | IPR012340 | - | |
| Rops2g04978 | 938 | PANTHER | DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER | 209 | 881 | IPR031327 | GO:0003677|GO:0005524|GO:0032508 | |
| Rops2g04978 | 938 | MobiDBLite | consensus disorder prediction | 1 | 199 | - | - | |
| Rops2g04978 | 938 | FunFam | DNA helicase | 216 | 320 | - | - | |
| Rops2g04978 | 938 | Gene3D | - | 216 | 320 | - | - | |
| Rops2g04978 | 938 | MobiDBLite | consensus disorder prediction | 99 | 121 | - | - | |
| Rops2g04978 | 938 | Pfam | MCM N-terminal domain | 224 | 317 | IPR027925 | - | |
| Rops2g04978 | 938 | Pfam | MCM P-loop domain | 491 | 713 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Rops2g04978 | 938 | CDD | MCM2 | 506 | 831 | - | - | |
| Rops2g04978 | 938 | PRINTS | Mini-chromosome maintenance (MCM) protein 2 signature | 356 | 368 | IPR008045 | GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775 | |
| Rops2g04978 | 938 | PRINTS | Mini-chromosome maintenance (MCM) protein 2 signature | 333 | 350 | IPR008045 | GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775 | |
| Rops2g04978 | 938 | PRINTS | Mini-chromosome maintenance (MCM) protein 2 signature | 467 | 478 | IPR008045 | GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775 | |
| Rops2g04978 | 938 | PRINTS | Mini-chromosome maintenance (MCM) protein 2 signature | 391 | 405 | IPR008045 | GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775 | |
| Rops2g04978 | 938 | PRINTS | Mini-chromosome maintenance (MCM) protein 2 signature | 452 | 463 | IPR008045 | GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775 | |
| Rops2g04978 | 938 | Pfam | MCM OB domain | 323 | 450 | IPR033762 | - | |
| Rops2g04978 | 938 | ProSitePatterns | MCM family signature. | 612 | 620 | IPR018525 | GO:0003677|GO:0005524|GO:0006260 | |
| Rops2g04978 | 938 | SMART | mcm | 320 | 833 | IPR031327 | GO:0003677|GO:0005524|GO:0032508 | |
| Rops2g04978 | 938 | Gene3D | - | 483 | 855 | IPR027417 | - | |
| Rops2g04978 | 938 | MobiDBLite | consensus disorder prediction | 1 | 30 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Rops2g04978 | Rops-Chr2 | 89532924 | 89538280 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Rops2g04978 | 21 | 933 | Core DNA Replication Machinery Family | AT1G44900 | 76.336 | 0.0 | 1368 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Rops2g04978 | K02540 | - | gmx:100799441 | 1629.38 |