Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g04948 ATGATGGCAAATAACTCAACTGGTCAGTTGGTGGGTTCAGAGATACATGGATTCCACACATTGCAAGAGCTGGATGTGGGGAGCATTATGGAGGAGGCAAGAACCAGATGGCTTCGTCCCAATGAGATTCATGCCATGCTTTGTAATTACAAGTTTTTCACCATCAATGTCAAGCCAGTGAATTTGCCCAAAAGTGGTACTATTATATTATTTGACCGCAAGATGCTTAGGAACTTTCGAAAAGATGGGCACAACTGGAAAAAGAAAAAAGATGGAAAAACTGTTAAAGAAGCTCATGAGCACTTAAAGGTTGGTAATGAAGAAAGGATCCACGTATATTATGCGCATGGCCAAGAAAACCCAAACTTTGTTCGTAGATGTTATTGGCTGCTTGATAAGAGTCTGGAACACATTGTCCTTGTTCATTACCGTGAAACACAGGAGTTGCAAGGTTCTCCTGTCACTCCGGTAAATTCAAATTCAAATTCAAACTCTAATTCTGCTCCTGATCCAACTGCACCATGGATTTTATCAGAAGAAATAGATTCGGGGACCACAACTGCATATGCTGGTGATATTAATGACAATATAACAGTCAAAAATCATGAACGGAGGCTTCAGGAGATTAATACACTTGAATGGGATGACCTAGTGATTTCAAATGATCTTAACACCTCTGCTGCACCTAATGGAGGAAAAGTTTCATGTTTCAATCAACAAAATCAAATTTTACTGAATGTGAGTTTCAGCAATGTAGCCAGCAATCCATCTGTGGAAATTCCTTCTTTTGATAATTTTACTCAGCCAATTGCTGGGAGCAATAATGTTCCTTACAATTCTGCAGAAAGTGTTAATCTTCAGACAATGGACAATCAAATACATCCAAATGAGCAGAGGAACCATCCTGTCTCTTTAAATGGTGTTGATTCCTTGGATACTTTTGTCAATGACAGATTGCAAAGTCAGGACAGCTTTGGAATGTGGGTGAACCACATCATGTCTGATTCACCTTGTTCAGCAGATGAGTCAGCTCTTGAATCCTCAGTTTCGTCTGTTCATGGACCATATTCATCTCTGGTAGTGGATAATCAGCAACTTTCTCTGCCAGAACAAGTATTTAATATCACTGATGTCTCCCATGCGTGGGTGTCTTCCACTGAGAAATCAAAGGTCCTGCTGACTGGATTCTTTCATAAGGAATATCGTCACCTCTCAAAGTCCAATCTGTTGTGTGTCTGTGGTGATGTAAGCATTCCTGCAGAAATTGTTCAGGATGGAGTCTACCGATGCTGGGTATCACCACATTCTCCTGGATTCGTGAATCTCTACTTGAGCTTGGATGGTCATAAGCCTATTAGCCAAGTTGTTAATTTTGAGTATCGTACTCCTGTTTTGCATGATCCAGCAGCTTCTATGGAAGAAAAGGACAACTGGGATGAGTTTCAACTCCAAACAAGGCTTGCTTATTTGCTCTTTGCTAAACAACAGAGTCTTGATGTTATCTCTAGTAAAATATCACCTAATAGACAGAAGGAGGCTAAGGAATTCGCCTTCAAAACATCATTTATTTCCAATAGTTGGCAAGACTTAATCAAGTCAACTGAAGACAAAAAAATTCCATTTTCTCAAGCAAAAGATGCCCTATTTGGAATTGCATTGAAAAACAGACTAAAGGAATGGCTTTTGGAAAGAATTATTTCAGGCTGCAAGATTGCTGACTATGATGCACATGGCCAAAGTGTAATCCATTTGTGTGCAATTTTGGGATATACTTGGGCTGTTTCCTTATTTTCATGGTCAGGCTTATCACTGGATTTCCGTGATAAATTTGGATGGACAGCTCTTCATTGGGCAGCATATTGCGGAAGGGAGAAAATGGTTGCAACTCTGTTATCTGCGGCGGCAAAGCCAAATTTGGTCACAGATCCAATTCCACAAAATCCTGGTGGATGCACTGCTGCTGATCTTGCTTATATGAGGGGTTATGATGGTTTAGCAGCTTATCTTTCAGAAAAGTCTCTGGTTGAGCATTTCAATGATATGAGCTTAGCTGGAAATATCAGTGGCTCACTGGAAACTACTAGCACGACTGATCCACCAAATTCTGAGAACCTTACCGAGGACCAGTTGTACCTGAAGGATACATTGGCAGCTTACAGAACAGCTGCTGATGCAGCAGCACGCATACAAGCTGCATTTAGGGAGCACTCCCTAAAATTGCAAACTCAGGCAGTTGAGTCTTCCAGTCCAGAGGCTGAAGCACGCAAAATAGTTGCAGCATTGAAGATTCAACATGCCTATCGTAATTTTGGAACAAGGAAAATTATGGCAGCTGCTGCTCGCATTCAGCATACATTCCGTACCTGGAAGACCCGAAAAGAATTTCTCAACATGCGTCGTCAGGCTATTAAAATTCAAGCTGCTTTCCGATGCTTTCAACAGCGGAAGCAATACCATAAAATTCTTTGGTCGGTTAGTGTGGTTGAGAAAGCAGTGCTGCGTTGGCGTTTAAAGAGAAAGGGCTTCCGTGGGCTCCAGCTTAATACTGTGGAAAGAATGGAAGATCAGAATCAACCAAGTGATGTAGAGGAGGAATTCTTTCGAATTGGTAGGAAACAAGCTGAAGAACGTGTTGAGAGATCTGTAGTACGTGTGCAGGCTATGTTCCGTTCTAAGAAAGCACAAGAAGAGTATAGAAGGATGAAGTTGGCCCTTAATCAAGCAAAGCTAGAACGGGACTATGAACAACTCCTCAGTACTGAAGTGGACATGGAACTGAAGACATAG 2787 0.4133 MMANNSTGQLVGSEIHGFHTLQELDVGSIMEEARTRWLRPNEIHAMLCNYKFFTINVKPVNLPKSGTIILFDRKMLRNFRKDGHNWKKKKDGKTVKEAHEHLKVGNEERIHVYYAHGQENPNFVRRCYWLLDKSLEHIVLVHYRETQELQGSPVTPVNSNSNSNSNSAPDPTAPWILSEEIDSGTTTAYAGDINDNITVKNHERRLQEINTLEWDDLVISNDLNTSAAPNGGKVSCFNQQNQILLNVSFSNVASNPSVEIPSFDNFTQPIAGSNNVPYNSAESVNLQTMDNQIHPNEQRNHPVSLNGVDSLDTFVNDRLQSQDSFGMWVNHIMSDSPCSADESALESSVSSVHGPYSSLVVDNQQLSLPEQVFNITDVSHAWVSSTEKSKVLLTGFFHKEYRHLSKSNLLCVCGDVSIPAEIVQDGVYRCWVSPHSPGFVNLYLSLDGHKPISQVVNFEYRTPVLHDPAASMEEKDNWDEFQLQTRLAYLLFAKQQSLDVISSKISPNRQKEAKEFAFKTSFISNSWQDLIKSTEDKKIPFSQAKDALFGIALKNRLKEWLLERIISGCKIADYDAHGQSVIHLCAILGYTWAVSLFSWSGLSLDFRDKFGWTALHWAAYCGREKMVATLLSAAAKPNLVTDPIPQNPGGCTAADLAYMRGYDGLAAYLSEKSLVEHFNDMSLAGNISGSLETTSTTDPPNSENLTEDQLYLKDTLAAYRTAADAAARIQAAFREHSLKLQTQAVESSSPEAEARKIVAALKIQHAYRNFGTRKIMAAAARIQHTFRTWKTRKEFLNMRRQAIKIQAAFRCFQQRKQYHKILWSVSVVEKAVLRWRLKRKGFRGLQLNTVERMEDQNQPSDVEEEFFRIGRKQAEERVERSVVRVQAMFRSKKAQEEYRRMKLALNQAKLERDYEQLLSTEVDMELKT* 929
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g04948 928 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 25 905 - -
Rops2g04948 928 ProSiteProfiles IQ motif profile. 775 804 IPR000048 GO:0005515
Rops2g04948 928 ProSiteProfiles CG-1 DNA-binding domain profile. 26 152 IPR005559 GO:0003677
Rops2g04948 928 Gene3D Immunoglobulins 369 464 IPR013783 -
Rops2g04948 928 MobiDBLite consensus disorder prediction 150 172 - -
Rops2g04948 928 Pfam IQ calmodulin-binding motif 800 819 IPR000048 GO:0005515
Rops2g04948 928 Coils Coil 891 911 - -
Rops2g04948 928 Gene3D - 774 822 - -
Rops2g04948 928 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 722 826 IPR027417 -
Rops2g04948 928 ProSiteProfiles IQ motif profile. 798 826 IPR000048 GO:0005515
Rops2g04948 928 ProSiteProfiles IQ motif profile. 879 907 IPR000048 GO:0005515
Rops2g04948 928 SMART iq_5 797 819 IPR000048 GO:0005515
Rops2g04948 928 SMART iq_5 774 796 IPR000048 GO:0005515
Rops2g04948 928 SMART iq_5 877 899 IPR000048 GO:0005515
Rops2g04948 928 Gene3D - 537 679 IPR036770 -
Rops2g04948 928 ProSiteProfiles Ankyrin repeat profile. 610 642 IPR002110 GO:0005515
Rops2g04948 928 SMART CG_1_2 29 147 IPR005559 GO:0003677
Rops2g04948 928 ProSiteProfiles Ankyrin repeat region circular profile. 610 638 - -
Rops2g04948 928 FunFam Calmodulin-binding transcription activator 5 369 465 - -
Rops2g04948 928 SMART ANK_2a 610 639 IPR002110 GO:0005515
Rops2g04948 928 SMART ANK_2a 649 680 IPR002110 GO:0005515
Rops2g04948 928 SUPERFAMILY E set domains 374 461 IPR014756 -
Rops2g04948 928 SUPERFAMILY Ankyrin repeat 553 672 IPR036770 -
Rops2g04948 928 FunFam calmodulin-binding transcription activator 5 540 680 - -
Rops2g04948 928 Pfam Ankyrin repeats (3 copies) 558 639 IPR002110 GO:0005515
Rops2g04948 928 Pfam CG-1 domain 32 145 IPR005559 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g04948 Rops-Chr2 89038721 89051182 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g04948 29 911 CAMTA Transcription Factor Family AT3G16940 54.350 0.0 924
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Rops2g04948 CG-1 2.5e-45 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g04948 K21596 - gmx:100793970 1541.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g04948 2 89038721 89051182 Rops2g04948 2 89038721 89051182 ECH
Rops2g04948 2 89038721 89051182 Rops11g01485 11 22403598 22413458 PCT