Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g04940 ATGGGGAGAGCTCCTTGCTGTGAGAAAGTGGGGTTGAAGAAAGGAAGATGGACTGCTGAAGAGGATAAGATCTTGACTGATTACATCCAAGAAAATGGGGAGGGATCATGGAGGTCCTTGCCCAAGAATGCAGGTTTGTTAAGATGTGGGAAGAGTTGCAGACTGAGATGGATCAATTACTTGAGATCAGATGTGAAGAGAGGCAACATCACTCCTCAAGAGGAAGAGATCATTGTCAAGTTGCATGCTGTTCTTGGTAACAGGTGGTCTGTAATAGCAGGACATTTACCAGGACGTACAGATAATGAGATAAAGAACTATTGGAACTCTCATTTGAGGAGAAAGATTTACTGTTTCATGAAGTCTTTAAATGAGTCCTTGCCTCCAATTGACATGGCTGCTATAAACGTTGCTGCTAATTCCAAGAGAAGAGCGAGTAGAGGTACAACAAATCAACCAACAAGGCAAGAGGACAAGAACATGGTTTTCAACCAAAACACCTTGGAAGGGAACGTGAGGGAGGTGCTTCAAGTTCAACCAACGGATAAAAGAAAAGCAACTTCACAAGTATATACTTTGGACACTTATGGAGAGGAATGGGGTAACACAAACGATGCAATTGACTCATGCCCCAGCATGGAAGAAGTTGAGGCCTTGGGACCATATGAATGGCTAGATGATGAAATTATGAAACTTAGTTACATGTTTGAAAATGGGGTACTTGTAAGCCCAGATGGGATTGTGACCAATGAAGAAGAGCCTAGCTGTGGACTAGTGAGTGAAGAGATATTGGGAATGAATGAGGAGAGCAAGAGTGGTGTTTGGAGTTCATCAAATGCAGAGAGTGGAGAGTGGAACACTAGCTGTTCATCGGTGAATTCTATCTATGATTATCAGTGGCCTGATATGCAATTAGAGGGTAGTTTTCAATCCTATAATCAATGGGACCTTTATGAAGAACAACAAAACTTGAATTGCTTGTGGGGTACTAGCAGTTCTGAAGTAAACAGCTTTTATCAGTGA 1023 0.4203 MGRAPCCEKVGLKKGRWTAEEDKILTDYIQENGEGSWRSLPKNAGLLRCGKSCRLRWINYLRSDVKRGNITPQEEEIIVKLHAVLGNRWSVIAGHLPGRTDNEIKNYWNSHLRRKIYCFMKSLNESLPPIDMAAINVAANSKRRASRGTTNQPTRQEDKNMVFNQNTLEGNVREVLQVQPTDKRKATSQVYTLDTYGEEWGNTNDAIDSCPSMEEVEALGPYEWLDDEIMKLSYMFENGVLVSPDGIVTNEEEPSCGLVSEEILGMNEESKSGVWSSSNAESGEWNTSCSSVNSIYDYQWPDMQLEGSFQSYNQWDLYEEQQNLNCLWGTSSSEVNSFYQ* 341
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Rops2g04940 340 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Rops2g04940 340 FunFam Myb transcription factor 71 116 - -
Rops2g04940 340 Gene3D - 13 66 - -
Rops2g04940 340 CDD SANT 16 61 IPR001005 -
Rops2g04940 340 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 181 - -
Rops2g04940 340 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Rops2g04940 340 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Rops2g04940 340 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Rops2g04940 340 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Rops2g04940 340 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Rops2g04940 340 SMART sant 66 114 IPR001005 -
Rops2g04940 340 SMART sant 13 63 IPR001005 -
Rops2g04940 340 CDD SANT 71 112 IPR001005 -
Rops2g04940 340 FunFam Myb transcription factor 11 67 - -
Rops2g04940 340 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Rops2g04940 340 Gene3D - 71 116 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Rops2g04940 Rops-Chr2 88882517 88884319 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g04940 1 232 MYB Transcription Factor Family AT5G49330 55.172 7.09e-76 235
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Rops2g04940 Myb_DNA-binding 3.9e-13 CL0123
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g04940 K09422 - gmx:100805532 506.523