Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g04934 ATGAATCTAAGCAACGGTAAGGGATCCATGTCAACGGTTACTTCAAGTGGTGCTATGAAATCCGGCGACGCCGTCTCCGACCAGTTTCCGGCGGGTCTTCGGGTTCTGGTGGTGGATGATGATCCCACGTGTCTTATGATCCTGGAGAAGATGTTACGCACATGTCTTTATGAAGTTACAAAGTGCAATCGAGCAGAGACTGCACTATCACTGTTAAGAGAGAACAAGAATGGGTTTGACATTGTTATTAGTGATGTGCATATGCCAGACATGGATGGATTCAAACTTTTAGAGCACATTGGGTTGGAAATGGACCTTCCAGTTATTATGATGTCTGCCGATGATGGTAAAAATGTTGTTATGAAGGGTGTAACACATGGTGCTTGCGATTATCTGATTAAACCTGTTCGCATAGAGGCTTTGAAGAACATATGGCAGCATGTGGTTAGGAAAAAAAAGAATGAGTGGAAAGATACAGAGCAATCTGGAAGTGCTGAAGAAGGAGATCGACAGCAAAAGGCATCTGATGATGCAGATTACTCATCCTCAGCCAACGAAGGCAGTTGGCGAAACTCAAAGAAGAGAAGAGACGAGGATGAGGAAGCAGATGAGAGAGATGACACATCCACATTAAAGAAACCACGGGTTGTTTGGTCTGTGGAGCTCCATCAACAGTTTGTGGCTGCTGTGGATCAACTGGGAATTGATAAAGCTGTTCCTAAAAAGATTCTGGAATTAATGAACGTTCCTGGGCTTACTAGAGAAAATGTTGCCAGCCACTTGCAGAAATATCGATTGTATCTTAGAAGGCTGAGTGGAGTTTCTCAGCACCAGAATAACATGAACAACTCGTTTCTCAACCCACAAGATGCAACATTTGGGACAATTTCTTCAATCAATGGGATTGATCTTCAAACTCTTGCTGTTGCTGGCCAGCTCCCCGCACAAAGTCTAGCCACACTTCAAGCGGCAGGACTTGGCAGATCAACTGCAAAAGCAGGTGTACCCATGCCTCTCATGGATCAAAGAAATCTTTTCAGTTTTGAAAACCCAAGGTTAAGATTTGTTGAAGGGCAGCAACAACATTTAAACAGTAGTAAACCAATGAACTTACTTCATGGAATCCCTACCAACATGGAGCCAAAGCAACTAGCCAATTTGCACCAGTCTACCCAATCCCTTGGCAGCTTGAACAACCCCTTGTTGATGCAGATGGCGCAATCCCAACCTAGAGGTCAGATGCTAAATGAAAATACTGGTCCTCGTATTCCCAGACTTCCCAATCCCTTGGGGCATCCTGATGGTCTTCTGGGCAGAAATGGGATAGCTGGTAGTAATAGAGCACCTGCTTATAATCCTGTTTCACATAGCTCTTCATTGTTGAGTTTTCCAACCACTGAAATGTCTGTCAATAATTTCCCTCTTGGAAGCACTCCAGGTATATCGGGCCTAACAGCAAAAGGTTCATTTCAAGAGGAAGTTACTTCAGGAATTAAAGGATCTGTTGGATTTCCAAGTTATGATATTTTCAATGAACTGCACCATCAGAAGTCCCAGGATTGGGAGATAACAAACCCAGGCCTGGCATATGATTCCTCCCAGCATGCAAATCCTTTACAAGGTAATGTTGATGTCTCTCCGTCAGTTTTACTCCATCAGGGATTTTCTTCTACCCAACAGACTGGACAAAGCAGAGAGCACACTTTGATTGGAAAAGCTATTTTCTCCCTGGGAGAAGGCTTGGAACAAGGTAATCTCCAAAATGCTGGTCAAAACCTCAATACCCTTCTTGCTGACAATTCAATAAGGGTTAAAGCTGAAAGAATTCCTGATGCAAGCTCCCAGACTAACCTCTTCCCTGAGCATTATGGGCAGGAGGATCTTATGAGTGCACTTCTGAAACAGCAAGAAGGCATTGAACCAGCTGAGAATGAGTTTGACTTTGATGGGTATTCTCTGGACAACATTCCTGTCTAG 1977 0.438 MNLSNGKGSMSTVTSSGAMKSGDAVSDQFPAGLRVLVVDDDPTCLMILEKMLRTCLYEVTKCNRAETALSLLRENKNGFDIVISDVHMPDMDGFKLLEHIGLEMDLPVIMMSADDGKNVVMKGVTHGACDYLIKPVRIEALKNIWQHVVRKKKNEWKDTEQSGSAEEGDRQQKASDDADYSSSANEGSWRNSKKRRDEDEEADERDDTSTLKKPRVVWSVELHQQFVAAVDQLGIDKAVPKKILELMNVPGLTRENVASHLQKYRLYLRRLSGVSQHQNNMNNSFLNPQDATFGTISSINGIDLQTLAVAGQLPAQSLATLQAAGLGRSTAKAGVPMPLMDQRNLFSFENPRLRFVEGQQQHLNSSKPMNLLHGIPTNMEPKQLANLHQSTQSLGSLNNPLLMQMAQSQPRGQMLNENTGPRIPRLPNPLGHPDGLLGRNGIAGSNRAPAYNPVSHSSSLLSFPTTEMSVNNFPLGSTPGISGLTAKGSFQEEVTSGIKGSVGFPSYDIFNELHHQKSQDWEITNPGLAYDSSQHANPLQGNVDVSPSVLLHQGFSSTQQTGQSREHTLIGKAIFSLGEGLEQGNLQNAGQNLNTLLADNSIRVKAERIPDASSQTNLFPEHYGQEDLMSALLKQQEGIEPAENEFDFDGYSLDNIPV* 659
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g04934 658 PIRSF RR_ARR_type-B 10 650 IPR017053 GO:0003677|GO:0003700|GO:0009736
Rops2g04934 658 ProSiteProfiles Response regulatory domain profile. 34 149 IPR001789 GO:0000160
Rops2g04934 658 NCBIfam myb-like DNA-binding domain, SHAQKYF class 213 266 IPR006447 GO:0003677
Rops2g04934 658 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 212 269 IPR017930 -
Rops2g04934 658 PANTHER TWO-COMPONENT RESPONSE REGULATOR 33 363 IPR045279 GO:0009736
Rops2g04934 658 SMART REC_2 33 145 IPR001789 GO:0000160
Rops2g04934 658 Pfam Myb-like DNA-binding domain 215 265 IPR001005 -
Rops2g04934 658 SUPERFAMILY Homeodomain-like 210 270 IPR009057 -
Rops2g04934 658 FunFam Two-component response regulator 209 272 - -
Rops2g04934 658 SUPERFAMILY CheY-like 32 156 IPR011006 -
Rops2g04934 658 CDD REC_typeB_ARR-like 35 149 - -
Rops2g04934 658 MobiDBLite consensus disorder prediction 189 210 - -
Rops2g04934 658 Pfam Response regulator receiver domain 35 143 IPR001789 GO:0000160
Rops2g04934 658 MobiDBLite consensus disorder prediction 1 21 - -
Rops2g04934 658 MobiDBLite consensus disorder prediction 155 210 - -
Rops2g04934 658 FunFam Two-component response regulator 33 170 - -
Rops2g04934 658 Gene3D - 210 272 - -
Rops2g04934 658 Gene3D - 33 171 - -
Rops2g04934 658 MobiDBLite consensus disorder prediction 155 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g04934 Rops-Chr2 88765734 88769972 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g04934 68 658 Response Regulator Gene Family AT3G16857 51.724 0.0 548
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Rops2g04934 Response_reg 5.4e-23 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g04934 - K14491 gmx:100814930 1138.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g04934 2 88765734 88769972 Rops2g04934 2 88765734 88769972 ECH