Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g04907 ATGTGTGGGGGTGCTATTATTTCTGATTTCATAGATGTGAACCCGAAATCTGGCCGGAGATTGGCCACCACGGAGGATCTCTGGTCCGAGCTTGATACTTTCTCTGACCTCCTTGGTTTCAACGCCACCTTCTCTTCCGAACATCAACCACCTTTCCACCACTTTCCAAAGCTCCCAAACAGCAAAGTGATGAAGGTGGAGAAGAAAACAGTGGTGGTTACAGAAAAGGGAAGAGTCAAGAGTGGTGAGAGTGAGGGGAAGGTTAAGCGGGTTCGGAAGAACGTGTACAGAGGAATTAGACAAAGACCATGGGGTAAGTGGGCTGCTGAGATAAGGGACCCACAAAAGGGTGTAAGGGTCTGGCTCGGCACCTTCAACACCGCCGAAGAAGCCGCTCGTGCTTACGACGGCGCCGCCAAGCGCATCCGTGGAGACAAGGCCAAACTCAACTTTCCCATCAACCCAACCAAGAAGCGGTGCCTAAACCCAGAGCTGAGTCAGCCCACTGGGCCCCCACCTTTCATCTCTGAGGCCCACACTGACCAAGATGATGCTGAACTGAAGAAGCAAATCTCAACCCTGGAATCATTCCTTGGTTTGGAGCAGCCTCAGCTATTTAGTGAGTGGGACATGTGGATGCTGGACGACGTCGTTATGCCCAACTGTAACCTGTTCTCAAACGGAATTGGAGAATGA 696 0.5158 MCGGAIISDFIDVNPKSGRRLATTEDLWSELDTFSDLLGFNATFSSEHQPPFHHFPKLPNSKVMKVEKKTVVVTEKGRVKSGESEGKVKRVRKNVYRGIRQRPWGKWAAEIRDPQKGVRVWLGTFNTAEEAARAYDGAAKRIRGDKAKLNFPINPTKKRCLNPELSQPTGPPPFISEAHTDQDDAELKKQISTLESFLGLEQPQLFSEWDMWMLDDVVMPNCNLFSNGIGE* 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g04907 231 Pfam AP2 domain 95 144 IPR001471 GO:0003700|GO:0006355
Rops2g04907 231 SUPERFAMILY DNA-binding domain 95 153 IPR016177 GO:0003677
Rops2g04907 231 SMART rav1_2 95 158 IPR001471 GO:0003700|GO:0006355
Rops2g04907 231 CDD AP2 96 154 IPR001471 GO:0003700|GO:0006355
Rops2g04907 231 PRINTS Ethylene responsive element binding protein signature 96 107 IPR001471 GO:0003700|GO:0006355
Rops2g04907 231 PRINTS Ethylene responsive element binding protein signature 118 134 IPR001471 GO:0003700|GO:0006355
Rops2g04907 231 FunFam Ethylene-responsive transcription factor 2 94 154 - -
Rops2g04907 231 Gene3D AP2/ERF domain 95 154 IPR036955 GO:0003700|GO:0006355
Rops2g04907 231 ProSiteProfiles AP2/ERF domain profile. 95 152 IPR001471 GO:0003700|GO:0006355
Rops2g04907 231 PANTHER DNA-BINDING DOMAIN 78 169 IPR044808 GO:0003700|GO:0009873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g04907 Rops-Chr2 88434105 88435617 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g04907 1 218 AP2-EREBP Transcription Factor Family AT3G16770 47.148 1.23e-58 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Rops2g04907 AP2 2.8e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g04907 K09286 - gmx:100779626 207.223