Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g04901 ATGTCAGGATTTAATAGCAGCCATGAGAGGAAGAAGAAGTACGCCATTGTTGGCGTATCTTCCATCCTACTTGTGGCCATGGTAGCTGCGGTGGCCGTCGGAATATCCTCCGGCGAAGAAGGTGTTGCTGATGATGGTGGTGAAACCCATTTCACAAAATCTCAAAAGAATGTTAAGGTGATTTGCGATTCGGTAGAATACAAAGAAACCTGCCACAAGAGTCTTGAAAAAGCATCCAACGAAACCACTGACATAAAAGAGTTGATCAAAGCTGCATTCAATGCCACTGCAGAAGAACTCAAAACGCAAATTGAAAACTCCACACTCTACCATCAATTGGCCACTGACAACATGACAAAACAAGCCATGGATATCTGCAAAGAAGTCCTTGGTTATGCCGTTGATGATGTTCACAAATCGGTTCACACTTTGGATAGGTTTGATATTAACAAGTTGAGTGAATACGCCTATGACCTAAAAGTTTGGCTCACTGGTACCATTTCCCACCAACAAACCTGTTTGGATGGTTTCGTGAACACAACCACTGAGGCTGGCCAAACCATGGCAAAGGTTCTCAACACCTCTTTGGAGCTAAGCAACAACGCTGTGGATATAGTAAATGGGGTGTCAAGTCTTTTGAAGGGTCTTAACTTAACCTCATTTACCGTAGCCACCAATAGGAAGCTTCTCTCTGATGATGGTATCCCTTCATGGGTTAGTGAAGGCCAAAGGCGTCTCCTTCAAGCCCCGGGAACTGTTAAGCCTGATGTAGTTGTTGCTCAAGATGGAACTGGCCAGTTCAAAACAGTCACTGAGGCCCTTAATCTTGTTCCTAAAAAGAACAAGAAGCCTTTTGTGATTTACGTCAAGGCTGGTGTCTACAATGAGTATGTTGCTTTGTCCAAGCACATGTCCCATGTCACTATCATTGGAGATGGTCCCACAAAGACCAGATTCACCGGCAACAAAAACTATGTTGATGGTGTGCAAACCTACTCCACAGCAACCTTCAGTGTGAATGCTCCTAACTTCATGGCCAAGGATGTTGGGTTTGAGAACACAGCAGGAGCTGAGAAGCACCAAGCCGTTGCACTTAGGGTAACAGCAGATCAAGCCGTGTTTTTCAACTGTCAGATGGATGGGTTCCAAGACACCCTCTATGTTCAATCACAACGCCAATTCTACCGTGACTGCACCATATCTGGCACCATTGACTTTGTCTTCGGTGATGCAGTTGGAGTTTTCCAGAACTGCAAGCTGATTGTGAGGAAACCCATGGAGAATCAACAATGCATGGTGACAGCAGGTGGCAGGGCCAAAGCTGACAGCCCTAGTGCACTTGTGTTCCAGAGTTGCCACTTCACAGGGGAACCAGATGTTGCTCTCTTGAACCCCAAGATAGCATATCTTGGAAGGCCATGGAGGGTGTATTCCAAGGTGGTGATCATGGACTCTCTCATTGATGACATTTTCGTACCAGAAGGATACATGCCATGGATGGGAAGTGCTTTCAAGGAAACATGCACTTATTATGAATACAACAACAAGGGACCTGGTGCTAACACTGCTGCTAGAGTCACATGGCCAGGTGTTAAAACCATAACACCTTTTGAGGCTGCTGATTATTATCCAGGGAGGTTTTATGAACTCGCTAATTCAACTCAACGTGATGCTTGGATTGTCGAGTCTGGGGTCCCTTACGCTCTTGGACCCCTTCCCAACCTTCCCGTCCCTTAA 1737 0.4583 MSGFNSSHERKKKYAIVGVSSILLVAMVAAVAVGISSGEEGVADDGGETHFTKSQKNVKVICDSVEYKETCHKSLEKASNETTDIKELIKAAFNATAEELKTQIENSTLYHQLATDNMTKQAMDICKEVLGYAVDDVHKSVHTLDRFDINKLSEYAYDLKVWLTGTISHQQTCLDGFVNTTTEAGQTMAKVLNTSLELSNNAVDIVNGVSSLLKGLNLTSFTVATNRKLLSDDGIPSWVSEGQRRLLQAPGTVKPDVVVAQDGTGQFKTVTEALNLVPKKNKKPFVIYVKAGVYNEYVALSKHMSHVTIIGDGPTKTRFTGNKNYVDGVQTYSTATFSVNAPNFMAKDVGFENTAGAEKHQAVALRVTADQAVFFNCQMDGFQDTLYVQSQRQFYRDCTISGTIDFVFGDAVGVFQNCKLIVRKPMENQQCMVTAGGRAKADSPSALVFQSCHFTGEPDVALLNPKIAYLGRPWRVYSKVVIMDSLIDDIFVPEGYMPWMGSAFKETCTYYEYNNKGPGANTAARVTWPGVKTITPFEAADYYPGRFYELANSTQRDAWIVESGVPYALGPLPNLPVP* 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g04901 578 Gene3D Invertase/pectin methylesterase inhibitor family protein 52 209 IPR035513 -
Rops2g04901 578 FunFam Pectinesterase 4 253 571 - -
Rops2g04901 578 PANTHER PECTINESTERASE 21 560 - -
Rops2g04901 578 SMART PMEI_2 53 205 IPR006501 GO:0004857
Rops2g04901 578 SUPERFAMILY Pectin lyase-like 252 548 IPR011050 -
Rops2g04901 578 ProSitePatterns Pectinesterase signature 1. 281 300 IPR018040 -
Rops2g04901 578 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 56 208 IPR035513 -
Rops2g04901 578 CDD PMEI-like_3 61 211 - -
Rops2g04901 578 Pfam Plant invertase/pectin methylesterase inhibitor 58 203 IPR006501 GO:0004857
Rops2g04901 578 Gene3D - 253 572 IPR012334 -
Rops2g04901 578 Pfam Pectinesterase 256 547 IPR000070 GO:0030599|GO:0042545
Rops2g04901 578 FunFam Pectinesterase 54 210 - -
Rops2g04901 578 ProSitePatterns Pectinesterase signature 2. 400 409 IPR033131 -
Rops2g04901 578 NCBIfam pectinesterase inhibitor domain 53 208 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g04901 Rops-Chr2 88375260 88377353 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g04901 3 576 Carbohydrate Esterase AT3G05610 45.848 0.0 555
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g04901 K01051 - gmx:100820068 891.338