Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g04900 ATGGACAATGGCAAGGAGAGGGAAGCTGGATTCAACTACGCCCTCAGTGGCAAGATAATGCTAATTGCCATTGTCGTTCTCTTCGTTGTTATCATCATAATGGTTTGTCTCCATGTCCATATCCGTTGGCACCTTTTACGTACACGCCGCCGCAGCACCCGCCAACGTCGCCGCCCTCCGCCACAGTTTGTCTTCTACGTGGACCCCGTGGTTCGCATGGCCCTGACGACGGTCACCTCCCATGGCCTCGATGCCTCTGTGATCTCTTCCCTCCCTGTCTTCGCTTTCTCCCCCAAGACCCACCCGGAGCCGGTGGAATGCTCGGTTTGCTTGTCGGAGTTTGAGAATGGAGAAACGGGTCGGATCCTGCCCAAATGTAACCATAGCTTCCACATTGACTGCATCGACATGTGGTTCCAGTCACACTCCACTTGCCCACTTTGTAGGGCACCCGTGGAGCCCCTACCCGCTGGAGAGACCCGACCCGAAGTAACCGTCACTGTGCGTGAACCTGAACCGGGTTCAAGTTCTGAGTTGCACAATGGGGAAGAGGTGAACCGGTCTGGACCGATGGTTTCTTCTTTGTCGTCCTCGACTGGGAAATCGTCGTTTATGGGTGTGACCGTTGAGGTTCCCGGAAGAAACGACAGCTTCGGTGGCGAGTCAGGTTCTGACTCGCAGTCGTCTTTTCGGTCGCCGATGAGTCGCGTGCTGTCGTTCACGAGAATTCTGAGCAGAGAGAGGAAAGTGAGTGCTTGTCCATCGTCGAGTTGTGTCGTGGGGTGCAGCTCTTCCATGACCGAGATTGACGCCGGAAGAGGAGGAAAAGAAGAGACTCAGTGA 843 0.5516 MDNGKEREAGFNYALSGKIMLIAIVVLFVVIIIMVCLHVHIRWHLLRTRRRSTRQRRRPPPQFVFYVDPVVRMALTTVTSHGLDASVISSLPVFAFSPKTHPEPVECSVCLSEFENGETGRILPKCNHSFHIDCIDMWFQSHSTCPLCRAPVEPLPAGETRPEVTVTVREPEPGSSSELHNGEEVNRSGPMVSSLSSSTGKSSFMGVTVEVPGRNDSFGGESGSDSQSSFRSPMSRVLSFTRILSRERKVSACPSSSCVVGCSSSMTEIDAGRGGKEETQ* 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g04900 280 CDD RING-H2_EL5-like 106 149 - -
Rops2g04900 280 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 71 154 IPR013083 -
Rops2g04900 280 MobiDBLite consensus disorder prediction 170 205 - -
Rops2g04900 280 SUPERFAMILY RING/U-box 87 155 - -
Rops2g04900 280 ProSiteProfiles Zinc finger RING-type profile. 107 149 IPR001841 -
Rops2g04900 280 MobiDBLite consensus disorder prediction 165 232 - -
Rops2g04900 280 FunFam RING-H2 finger protein ATL3 75 154 - -
Rops2g04900 280 SMART ring_2 107 148 IPR001841 -
Rops2g04900 280 Pfam Ring finger domain 106 149 IPR001841 -
Rops2g04900 280 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 13 157 IPR044675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g04900 Rops-Chr2 88358210 88359398 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g04900 12 277 Rapid Response to Elicitors AT3G16720 48.252 4.95e-68 211
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g04900 - - aprc:113848270 263.848
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g04900 2 88358210 88359398 Rops2g04900 2 88358210 88359398 ECH
Rops2g04900 2 88358210 88359398 Rops11g01534 11 23338710 23340034 PCT