Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g04859 ATGCTGATGCTGAAATTCCATACCAGCAATGCACTTGTTTGTGCCAAGGGTATGCCATTTACAAGAACATGGCCAACCCCAAAATGTTCTCCTCTTCTGAAACTCCAACTCCAATACTTCTCTCTCAATTTCTCCTCTAACCCACACTCTCATACGGCGTCGTACCTCATCAACAATTCTGGGTTCTCCCCAGAAATCGCTTTCAAAGCTTCCCACAAGCTTAATCTCCACAACCACCAAAAATCCGATTCAGTTCTCGCCTTCTTCAGAACCCACGGCTTCTCTCACTCTCAAATTAGCAATATCATCAGAAGGCAATCATGGCTCCTCTCCTGCGACCCCCACGAGGAACTCTTGCCCAAGTTTCAATTTTTACTCTCTAAAGGTGCTTCTACCTCCGATGTTGTTCACATTGTGTGTATCGACCCCAGATTCCTGGGAGCAAGCTTGCACTATCAAATAATCCCTACATACAAATTTGTTAGAGGGTTCCTTCAATCTGACAAGCAAACCATTGCTTGTATGATTCGTAGTTGTGGTTTTTCTTCTGATGGGCTCGTGGAACATAACATCAAATTGTTGCTTGATAATGGAGTCACTCACTCAAGCATTGCTAGGTTGTTTCACACACGGTCTAGAATACTTTGCTCCTTTAACCTGTTGAAGACTGTTGAGGAATTGAAGGAACTGGGTTTCGATTCTTCAACTTCAACTTTTAGTGTTGCATTGCTTGCCAAGAGAACTGTGAACAAAACCAGGTGGGCTGAGAAAAGTGAAATTTTTAAGAGGTGGGGTTGGTCTCAAGAACACATTCTTGAAGCATTTAAGAAGAAGCCTTACTGTATGTTGTCATCCACTGATAAAATTAATGCTGTTATGAGTTTTTGGGTTAATGAATTAGGTTTTAATTCTTTGCATCTTGTCAAAGCTCCAGGAATCTTTTCATATAGTCTCCAGAAGAGGATTATTCCAAGGGCTTCAGTCGTGCAGTTTCTTATCTCAAAAGGTCTGCGGGACAAGGATGCAGGCGTGAATACACCATTTCTTATTACTGAGAAGTTGTTCCTGGAAAAGTTTGTGAAACATTTTAAGAAGGATTCTTCTCATCTGTTAAAGCTGTATGAGGAAAAAATGAAACTTGCCAATAGCAGGGAGAAAGCCCTCACTGAGTATTCTTCTGCTGGGGAACCCATTCCCACAAACAAGAGACATGCTGCTGCAAAGATATTCAGCCATCCTGAAGTTGTTGCTGAAGAACCCTGGTATGGTATTGAGCAGGAATACACCTTGATGCAGAAACATATCCAATGGCCTCTTGGATGGCCTGTTGATGGTTTTCCTGGGTCTCAGGGACCATATTACTGTGGTAATCGGTCTTTGATAAGGCTTATGGGCGTGAGGTTGTTGACTCCCATTACAAAGCTTGTCTTTTTGCCGGCATTAACATCAGTGGAATTAATGGAGAAGTGA 1470 0.4231 MLMLKFHTSNALVCAKGMPFTRTWPTPKCSPLLKLQLQYFSLNFSSNPHSHTASYLINNSGFSPEIAFKASHKLNLHNHQKSDSVLAFFRTHGFSHSQISNIIRRQSWLLSCDPHEELLPKFQFLLSKGASTSDVVHIVCIDPRFLGASLHYQIIPTYKFVRGFLQSDKQTIACMIRSCGFSSDGLVEHNIKLLLDNGVTHSSIARLFHTRSRILCSFNLLKTVEELKELGFDSSTSTFSVALLAKRTVNKTRWAEKSEIFKRWGWSQEHILEAFKKKPYCMLSSTDKINAVMSFWVNELGFNSLHLVKAPGIFSYSLQKRIIPRASVVQFLISKGLRDKDAGVNTPFLITEKLFLEKFVKHFKKDSSHLLKLYEEKMKLANSREKALTEYSSAGEPIPTNKRHAAAKIFSHPEVVAEEPWYGIEQEYTLMQKHIQWPLGWPVDGFPGSQGPYYCGNRSLIRLMGVRLLTPITKLVFLPALTSVELMEK* 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g04859 489 SUPERFAMILY Glutamine synthetase/guanido kinase 399 457 IPR014746 GO:0003824
Rops2g04859 489 Pfam mTERF 251 340 IPR003690 GO:0003690|GO:0006355
Rops2g04859 489 Pfam mTERF 86 234 IPR003690 GO:0003690|GO:0006355
Rops2g04859 489 Gene3D Glutamine synthetase/guanido kinase, catalytic domain 400 467 - -
Rops2g04859 489 FunFam Mitochondrial transcription termination factor-like 150 367 - -
Rops2g04859 489 SMART mt_12 205 233 IPR003690 GO:0003690|GO:0006355
Rops2g04859 489 SMART mt_12 100 131 IPR003690 GO:0003690|GO:0006355
Rops2g04859 489 SMART mt_12 305 338 IPR003690 GO:0003690|GO:0006355
Rops2g04859 489 SMART mt_12 136 167 IPR003690 GO:0003690|GO:0006355
Rops2g04859 489 SMART mt_12 272 303 IPR003690 GO:0003690|GO:0006355
Rops2g04859 489 PANTHER CGI-12 PROTEIN-RELATED 48 364 IPR003690 GO:0003690|GO:0006355
Rops2g04859 489 Gene3D Transcription termination factor 3, mitochondrial 181 368 IPR038538 -
Rops2g04859 489 Gene3D Transcription termination factor 3, mitochondrial 64 180 IPR038538 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g04859 Rops-Chr2 87828249 87832695 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Rops2g04859 mTERF 5.4e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g04859 K15032 - gmx:102667698 451.825