Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g04858 ATGGATAATGTTGGAGGCAGTTCCTCAAATGACAATGGTGGCATCAAGGAACAAGACCGGCTGTTACCAATAGCCAATGTTGGAAGGATCATGAAGCAGGTTTTACCTCAGAATGCAAAAATCTCCAAGGAATCAAAGGAAACAATGCAAGAGTGTGTGTCAGAGTTCATAAGCTTTGTAACCAGTGAGGCATCAGAGAAGTGCAGGAAGGAAAGGAGGAAGACTGTGAATGGAGATGACATCTGCTGGGCCTTGGGGACACTGGGTTTTGATGATTATGCAGAACCAATGAGAAGGTATTTGCATAGATATAGAGAACTAGAGGTAGATAGAACTCATCAAGAAAGAGGTAATAGCCCCCAACAGAAAGATGAACTATTCAAGTTTCCCCCTAGAGGAACTAGGCAGTAA 411 0.4307 MDNVGGSSSNDNGGIKEQDRLLPIANVGRIMKQVLPQNAKISKESKETMQECVSEFISFVTSEASEKCRKERRKTVNGDDICWALGTLGFDDYAEPMRRYLHRYRELEVDRTHQERGNSPQQKDELFKFPPRGTRQ* 137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g04858 136 Gene3D Histone, subunit A 9 129 IPR009072 GO:0046982
Rops2g04858 136 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 8 115 IPR027113 GO:0001228|GO:0006355|GO:0016602
Rops2g04858 136 PRINTS CCAAT-binding transcription factor subunit A signature 49 67 - -
Rops2g04858 136 PRINTS CCAAT-binding transcription factor subunit A signature 68 86 - -
Rops2g04858 136 PRINTS CCAAT-binding transcription factor subunit A signature 87 105 - -
Rops2g04858 136 SUPERFAMILY Histone-fold 18 119 IPR009072 GO:0046982
Rops2g04858 136 ProSitePatterns NF-YB/HAP3 subunit signature. 52 68 IPR003956 GO:0005634|GO:0006355|GO:0043565
Rops2g04858 136 FunFam Nuclear transcription factor Y subunit B-3 10 129 - -
Rops2g04858 136 MobiDBLite consensus disorder prediction 109 136 - -
Rops2g04858 136 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 21 85 IPR003958 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g04858 Rops-Chr2 87817536 87817946 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g04858 15 117 CCAAT-HAP3 Transcription Factor Family AT2G47810 74.038 3.10e-56 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Rops2g04858 CBFD_NFYB_HMF 5.5e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g04858 K08065 - gmx:100794513 216.083
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g04858 2 87817536 87817946 Rops11g02589 11 44222289 44224867 PCT