Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g04849 ATGGAACGGTACGGCCGTGCCAGTGAAGGGTCGCAGTCTGATCCGTCTCCGGGATGGACCGTCGCCGGCGGAGAAACAGGCCTTGAAGAGTCTGTTTGGCAATTTGGATTGGTTGGTGGTGAATCGTACCCTCTTCGACCCGATGAAGCTGATTGTATCTATTATCTGAGAACGGGTTTTTGTGGTTATGGCTCACGGTGTCGGTTCAATCATCCACGTGACCGTGGCGCGATTATTGGAGCTGCGAGGAGTGGTGGGGAGTATCCAGAACGCGTAGGACAACCTGTGTGCCAGTATTATATGAGAACGGGATCATGCAAATTCGGTACATCCTGCAAATACCACCATCCTAGGCAGGCAGCAGGCACTACTACCCCTGTGTCGCTAAATTATTATGGATATCCATTGCGAGTGGGTGAGAAAGAGTGTTCCTATTATGTGAAAACGGGACATTGCAAGTTTGGTGCAACTTGTAAATTCCATCATCCACAGACTGGGGGTGTCCAAGTTCTAGCATCATCACCAGTTCCCCCTGTTTCACCTCTCCCTATACATGTACCTTCACCAATGTATCCAACTGTACAGCCTCCATCTGGTCCTTCATCGCAGCAGTATGGTGTACTCGTTGCAAGACCACCTCTGCTACCTGGTTCATTAGTCCAGGGCCCCTATGGGCCTGTGGTAGTGTCCCCTACCATGGTCCATTTTTCAGGCTGGGGTCCTTATCAGGCTCCTGCTACAAATCCTGTACTTCCTTCTAGTACTCCGTCTAATGTTGGTTCAACACAGCTTTATGGGGTAACCCACCTACCTTCATCAGCAACCTCCTATACCGGACCTTATCAACCTTCTGGTTCCTCAATTGGTCCTTCGGGCAATAGTCAGAAGGAGCACTCATTGCCAGAAAGGCCTGATCAACCAGAATGTCACTATTACATGAAAACAGGGGAGTGTAAATTTGGTCCGTCATGTAGATATCATCATCCACCAGATATGAGTGCACCGAAAGCAAACGTGATCCTTAGTCCTGTGGGTCTTCCTTTGCGCCCGGGGGCACCACCTTGCACTCATTATACGCAGCGTGGAGTTTGTAAGTTTGGTTCTGCATGCAAATTTGATCATCCTATGGGATCGCTGAGTTATAGTCCATCTGCTTCTTCCCTGGCTGATATGCCGGTTGCACCCTATCCTGTGGGTTCCTCAATTGGTACTCTTGCTCCATCATCTTCATCCTCAGAGTTGCGGCCTGAACTTGCCTCAGGATCCAGCAAGGAGCCTGTTTCATCCAGAATGTCTTCATCAATGAACACATCGAGTGAATCAGTTGGCTTGACCTTGTCAACTGTTGGACCCATTTCTCAATCAAGCACCCAACCATCTGCTCAGAGTTCCAGTTCTTTGGCAACTTCCAGTGCCAACACAAATACTGCTGTCTCTCACACCTCAAGCTAA 1452 0.4924 MERYGRASEGSQSDPSPGWTVAGGETGLEESVWQFGLVGGESYPLRPDEADCIYYLRTGFCGYGSRCRFNHPRDRGAIIGAARSGGEYPERVGQPVCQYYMRTGSCKFGTSCKYHHPRQAAGTTTPVSLNYYGYPLRVGEKECSYYVKTGHCKFGATCKFHHPQTGGVQVLASSPVPPVSPLPIHVPSPMYPTVQPPSGPSSQQYGVLVARPPLLPGSLVQGPYGPVVVSPTMVHFSGWGPYQAPATNPVLPSSTPSNVGSTQLYGVTHLPSSATSYTGPYQPSGSSIGPSGNSQKEHSLPERPDQPECHYYMKTGECKFGPSCRYHHPPDMSAPKANVILSPVGLPLRPGAPPCTHYTQRGVCKFGSACKFDHPMGSLSYSPSASSLADMPVAPYPVGSSIGTLAPSSSSSELRPELASGSSKEPVSSRMSSSMNTSSESVGLTLSTVGPISQSSTQPSAQSSSSLATSSANTNTAVSHTSS* 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g04849 483 ProSiteProfiles Zinc finger C3H1-type profile. 349 377 IPR000571 GO:0046872
Rops2g04849 483 SUPERFAMILY CCCH zinc finger 353 379 IPR036855 GO:0046872
Rops2g04849 483 ProSiteProfiles Zinc finger C3H1-type profile. 91 119 IPR000571 GO:0046872
Rops2g04849 483 SUPERFAMILY CCCH zinc finger 138 164 IPR036855 GO:0046872
Rops2g04849 483 MobiDBLite consensus disorder prediction 275 297 - -
Rops2g04849 483 SMART c3hfinal6 139 164 IPR000571 GO:0046872
Rops2g04849 483 SMART c3hfinal6 46 73 IPR000571 GO:0046872
Rops2g04849 483 SMART c3hfinal6 91 118 IPR000571 GO:0046872
Rops2g04849 483 SMART c3hfinal6 349 376 IPR000571 GO:0046872
Rops2g04849 483 SMART c3hfinal6 303 330 IPR000571 GO:0046872
Rops2g04849 483 MobiDBLite consensus disorder prediction 275 307 - -
Rops2g04849 483 SUPERFAMILY CCCH zinc finger 94 119 IPR036855 GO:0046872
Rops2g04849 483 SUPERFAMILY CCCH zinc finger 306 331 IPR036855 GO:0046872
Rops2g04849 483 ProSiteProfiles Zinc finger C3H1-type profile. 137 165 IPR000571 GO:0046872
Rops2g04849 483 ProSiteProfiles Zinc finger C3H1-type profile. 303 331 IPR000571 GO:0046872
Rops2g04849 483 Gene3D - 292 377 - -
Rops2g04849 483 Gene3D - 44 118 - -
Rops2g04849 483 FunFam Zinc finger nuclease 2 45 122 - -
Rops2g04849 483 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 140 164 IPR000571 GO:0046872
Rops2g04849 483 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 352 376 IPR000571 GO:0046872
Rops2g04849 483 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 48 73 IPR000571 GO:0046872
Rops2g04849 483 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 305 330 IPR000571 GO:0046872
Rops2g04849 483 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 94 118 IPR000571 GO:0046872
Rops2g04849 483 Gene3D - 119 173 - -
Rops2g04849 483 PANTHER PROTEIN PHOSPHATASE RELATED 40 411 - -
Rops2g04849 483 MobiDBLite consensus disorder prediction 405 483 - -
Rops2g04849 483 FunFam CCCH type zinc finger protein 301 386 - -
Rops2g04849 483 ProSiteProfiles Zinc finger C3H1-type profile. 46 74 IPR000571 GO:0046872
Rops2g04849 483 MobiDBLite consensus disorder prediction 1 23 - -
Rops2g04849 483 SUPERFAMILY CCCH zinc finger 49 74 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g04849 Rops-Chr2 87667497 87672361 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g04849 1 445 C2H2 Transcription Factor Family AT5G18550 56.427 2.35e-154 445
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Rops2g04849 zf-CCCH 1.6e-07 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g04849 - - gmx:100789405 763.066
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g04849 2 87667497 87672361 Rops11g00886 11 12758361 12768011 PCT