Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g04837 ATGGGGAGGCTCTCCAAGACTCAAGTCTCAAACGCCACAAATTCCGAAGACGAAGAAGAGGTCAACGACCAGATCGAAGACGATGAGGAAGAGCTCGAAGCCGTGGGTCGTTCCGCTAGCTCCGACGATGAGGATAATACTCAAGATGAAGCCGTTGAAGACGGAGACGACGATAAACAGGATGAAAGTAATGTTGATCCTGAAATTAGTACGCGAGAGAAGGCAAGATTAAGAGAAATGGAGAAAATGAAGAAACAGAAGATTCAGGAGATATTGGATAAACAAAATGCAGTCATTGATGCTGATATGAACAATAGAGGTAAGGGTCGATTGAAGTATCTCTTACAGCAAACTGAGCTTTTTGCTCATTTTGCCAAAGGTGATCAATCTTCATCTCAAAAGAAGTCAAGGGGAAGGGGACGTCATGCATCAAAAGTGACTGAAGAAGAGGAAGATGAAGAATACCTTAAAGAAGAAGAAGATGGTTTAGCAAACACACGGCTGCTGACTCAACCATCATGTATCCAAGGGAAGATGAGGGATTACCAACTTGCTGGGCTAAACTGGCTCATACGATTGTATGAGAATGGAATAAATGGAATTCTGGCTGATGAAATGGGGCTTGGTAAAACCTTACAAACTATATCTTTGTTGGGCTATTTAAATGAGTTTAGAGGAATAAAAGGCCCTCATATGGTGGTTGCTCCAAAATCTACTCTTGGAAATTGGATGAATGAGATTCGGCGCTTTTGTCCTATGTTACGTGCTGTAAAGTTCCTTGGTAATCCGGATGAAAGGAGACACATAAGAGAGGAGTTGTTGGTTGCTGGAAAGTTTGATGTGGTTGTGACAAGTTTTGAAATGGTAATCAAGGAGAAGTCTGCTCTGCGTCGATTTAGTTGGCGTTACATAATTATTGATGAAGCCCATCGAATCAAGAATGAGAACTCCATCCTGTCCAAAACAATGAGGCTATACAATACAAACTATCGACTCCTTATAACTGGCACACCACTACAGAACAATCTTCATGAACTCTGGGCTCTTCTCAACTTCCTTCTGCCTGAAATATTTAGTTCTGCTGAAACTTTTGATGAATGGTTTCAAATCTCTGGTGAAAATGACCAACAGGAGGTTGTTCAACAACTACACAAGGTCCTCCGTCCATTTCTCCTTCGAAGGTTGAAATCAGATGTTGAGAAAGGGTTGCCACCAAAAAAGGAAACCATTCTCAAAGTAGGCATGTCCCAAATGCAGAAACAGTATTATAAGGCATTATTGCAGAAGGATCTTGAAGTTGTGAATGCTGGTGGAGAACGGAAACGTCTCCTAAATATAGCAATGCAACTACGTAAATGTTGTAATCACCCATATCTCTTCCAAGGTGCTGAACCTGGTCCTCCCTATACGACAGGAGACCATCTCATTACAAATGCTGGTAAAATGGTTCTACTGGATAAATTACTTCCTAAGCTAAAAGAGCGGGATTCTAGGGTCCTTATATTTTCACAGATGACTAGGCTGCTAGACATACTTGAAGATTATTTGATGTTTTGTGGATACCAATATTGTCGCATAGATGGCAATACTGGTGGTGAAGATCGTGATGCTTCCATTGAGGCTTTCAACAAACCAGGAAGTGAGAAATTTGTCTTCTTGTTATCTACTCGAGCTGGAGGTCTTGGAATTAATCTTGCTACTGCTGATGTTGTCATTCTTTATGATAGTGACTGGAATCCACAAATGGACCTGCAAGCTCAGGATCGTGCTCATAGGATCGGCCAAAAGAAAGAAGTTCAAGTTTTTCGATTCTGTACCGAGTATACGATTGAGGAAAAAGTCATTGAAAGGGCCTACAAAAAGCTTGCACTTGATGCTTTGGTAATTCAGCAAGGGCGATTGGCTGAGCAGAAGACTGTTAATAAAGATGAGTTGCTTCAAATGGTTAGATTTGGTGCTGAAATGGTTTTTAGTTCCAAGGACAGTACAATTACAGATGAGGATATTGACAGAATTATTGCTAAAGGAGAGGAAGCAACAGCCGAGCTTGATGCTAAGATGAAGAAATTTACTGAAGATGCTATCAAATTCAAGATGGACAACACTGCGGAGTTGTATGATTTTGATGATGAGAAGGATGAGAACAACTTTGATTTCAAAAAAATTGTGAGTGAAAACTGGGTTGAGCCACCTAGAAGAGAACGGAAGCGCAATTACTCAGAGTCTGAATACTTCAAGCAAACAATGCGTCAAGGTGGTCCTACTAAACCAAAAGAGCCCCGTATTCCTAGGATGCCTCAATTGCATGATTTCCAGTTTTTCAACACACAAAGGCTAAGTGAGCTGTATGAAAAGGAAGTTCGTTATCTAATGCAAACACATCAGAAGAATCAGGTGAAAGACTCCATAGATGTTGATGAACCAGAAGAGGTGGGAGATCCATTGACTGCTGAAGAGTTGGAAGAAAAGGAGCGCCTGCTAGAGGAGGGATTTTCATCATGGAGCCGGAAGGATTTTAATACTTTCATTAGGGCATGTGAGAAGTATGGCCGAAATGATATAAAAAGTATTGCTTCTGAGATGGAAGGGAAAACAGAGGGGGAAGTTGAAAGATATGCAAAAGTTTTCAAAGAAAGATACAAGGAATTAAATGATTATGATAGAATTATTAAAAACATCGAAAGAGGGGAGGCAAGAATAACTCGGAAAGATGAGATCATGAAAGCTATTGGGAAGAAGTTGGACCGCTACAAGAATCCTTGGTTAGAGTTGAAGATACAATACGGACAAAACAAAGGGAAGTTATACAATGAAGAATGTGACCGATTCATGATATGCATGATTCACAAACTTGGCTATGGGAATTGGGATGAATTGAAGGCAGCGTTTAGAATGTCACCCTTGTTTCGATTTGATTGGTTTGTAAAATCTCGCACTACACAGGAACTAACAAGGAGGTGTGACACCCTCATTCGGTTGGTAGAGAAGGAAAACCAAGAATATGATGAGAGGGAGAGACAAGCTCGTAAAGAAAAGAAACTTGCCTCCAAGAGTATGACCCCATCAAAGCGTGCCATGCCAAGACAGAATGAGAGTCCCTCTCTGAAGAAGCGGAAGCAGTTAACTATGGATGACTATATGAGCTCGGGGAAGAGAAAAAAATAA 3165 0.4085 MGRLSKTQVSNATNSEDEEEVNDQIEDDEEELEAVGRSASSDDEDNTQDEAVEDGDDDKQDESNVDPEISTREKARLREMEKMKKQKIQEILDKQNAVIDADMNNRGKGRLKYLLQQTELFAHFAKGDQSSSQKKSRGRGRHASKVTEEEEDEEYLKEEEDGLANTRLLTQPSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLNEFRGIKGPHMVVAPKSTLGNWMNEIRRFCPMLRAVKFLGNPDERRHIREELLVAGKFDVVVTSFEMVIKEKSALRRFSWRYIIIDEAHRIKNENSILSKTMRLYNTNYRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVEKGLPPKKETILKVGMSQMQKQYYKALLQKDLEVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGDHLITNAGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMFCGYQYCRIDGNTGGEDRDASIEAFNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQMDLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGRLAEQKTVNKDELLQMVRFGAEMVFSSKDSTITDEDIDRIIAKGEEATAELDAKMKKFTEDAIKFKMDNTAELYDFDDEKDENNFDFKKIVSENWVEPPRRERKRNYSESEYFKQTMRQGGPTKPKEPRIPRMPQLHDFQFFNTQRLSELYEKEVRYLMQTHQKNQVKDSIDVDEPEEVGDPLTAEELEEKERLLEEGFSSWSRKDFNTFIRACEKYGRNDIKSIASEMEGKTEGEVERYAKVFKERYKELNDYDRIIKNIERGEARITRKDEIMKAIGKKLDRYKNPWLELKIQYGQNKGKLYNEECDRFMICMIHKLGYGNWDELKAAFRMSPLFRFDWFVKSRTTQELTRRCDTLIRLVEKENQEYDERERQARKEKKLASKSMTPSKRAMPRQNESPSLKKRKQLTMDDYMSSGKRKK* 1055
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g04837 1054 Coils Coil 77 97 - -
Rops2g04837 1054 MobiDBLite consensus disorder prediction 1 15 - -
Rops2g04837 1054 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 161 394 IPR027417 -
Rops2g04837 1054 Gene3D - 830 884 - -
Rops2g04837 1054 FunFam Chromatin-remodeling complex ATPase 180 395 - -
Rops2g04837 1054 Pfam HAND 743 825 IPR015194 GO:0003677|GO:0006338|GO:0031491
Rops2g04837 1054 Gene3D - 918 1021 - -
Rops2g04837 1054 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 82 1038 - -
Rops2g04837 1054 Pfam SNF2-related domain 192 459 IPR000330 GO:0005524|GO:0140658
Rops2g04837 1054 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 484 635 IPR001650 -
Rops2g04837 1054 MobiDBLite consensus disorder prediction 125 160 - -
Rops2g04837 1054 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 396 677 IPR027417 -
Rops2g04837 1054 Coils Coil 980 1014 - -
Rops2g04837 1054 CDD SF2_C_SNF 480 605 - -
Rops2g04837 1054 CDD DEXHc_SMARCA1_SMARCA5 176 396 IPR044754 GO:0005524
Rops2g04837 1054 Gene3D iswi atpase 885 917 - -
Rops2g04837 1054 FunFam ISWI chromatin-remodeling complex ATPase CHR11 isoform A 830 884 - -
Rops2g04837 1054 MobiDBLite consensus disorder prediction 1030 1054 - -
Rops2g04837 1054 MobiDBLite consensus disorder prediction 45 63 - -
Rops2g04837 1054 MobiDBLite consensus disorder prediction 1001 1054 - -
Rops2g04837 1054 SUPERFAMILY HAND domain of the nucleosome remodeling ATPase ISWI 742 832 IPR036306 GO:0003677|GO:0006338|GO:0031491
Rops2g04837 1054 SUPERFAMILY Homeodomain-like 833 883 IPR009057 -
Rops2g04837 1054 SMART sant 830 879 IPR001005 -
Rops2g04837 1054 SMART sant 932 993 IPR001005 -
Rops2g04837 1054 Pfam Helicase conserved C-terminal domain 482 594 IPR001650 -
Rops2g04837 1054 MobiDBLite consensus disorder prediction 1 76 - -
Rops2g04837 1054 FunFam ISWI chromatin-remodeling complex ATPase CHR11 731 829 - -
Rops2g04837 1054 Pfam SLIDE 887 997 IPR015195 GO:0003677|GO:0005634|GO:0006338
Rops2g04837 1054 Gene3D - 180 395 IPR038718 -
Rops2g04837 1054 SMART helicmild6 510 594 IPR001650 -
Rops2g04837 1054 CDD SANT 833 877 IPR001005 -
Rops2g04837 1054 SUPERFAMILY Homeodomain-like 885 1007 IPR009057 -
Rops2g04837 1054 MobiDBLite consensus disorder prediction 16 33 - -
Rops2g04837 1054 FunFam ISWI chromatin-remodeling complex ATPase CHR11 918 1022 - -
Rops2g04837 1054 ProSiteProfiles SANT domain profile. 829 881 IPR017884 -
Rops2g04837 1054 MobiDBLite consensus disorder prediction 1001 1018 - -
Rops2g04837 1054 FunFam ISWI chromatin-remodeling complex ATPase CHR11 400 692 - -
Rops2g04837 1054 Gene3D - 400 692 IPR027417 -
Rops2g04837 1054 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 191 356 IPR014001 -
Rops2g04837 1054 Gene3D ISWI, HAND domain 731 829 IPR036306 GO:0003677|GO:0006338|GO:0031491
Rops2g04837 1054 Coils Coil 15 38 - -
Rops2g04837 1054 SMART ultradead3 175 367 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g04837 Rops-Chr2 87546131 87554840 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g04837 200 621 RAD5 or RAD16-like Gene Family AT1G02670 27.327 2.83e-42 163
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Rops2g04837 SNF2_N 2.1e-73 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g04837 K11654 - gmx:100791510 1954.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g04837 2 87546131 87554840 Rops2g04837 2 87546131 87554840 ECH
Rops2g04837 2 87546131 87554840 Rops11g00912 11 13061175 13070284 PCT