Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g04833 ATGGGTAGCATAAGAAGAGAGGCAGAGGAACTGCCATTGACTGTGCCACCACCACTCTCTCAAATCCCACCACCTTCTTCTTCTGTTATTGACCCTTCAACCATTGCTGAAATGGGTAACACTAAAGCCTCCAGAAAGCGTGGTCCACAATTGGGTTCTACCAACAATGGCGAAAGCCTTAAAATGGAACGTGATCGAAGGTTGAAGATGACTCAGATGTTCACTCAGCTTCGTACCACTGTCCCTGGTGTTTTTCCTCAGGCTACAAGGGAAGTGATTATAAACGAAACAATTCGCTACATTAAGGACCTAGAGAAGAAGAAGCAAAGGTTGGAGGAGATCAAGGAGTCCATGAAACAAGTAGATGGGAGTTTGATGCTTCCATGTGGAAACAGGAATTGCTCCATCACGGTTACTGTCTCAAGCAATGTTGCTTTCTTTGGAATTCAATCGGTGGCTCAACCAGGTTTGATCACTGTGATTTTAAAGGTTTTCTGCAAGCACCAAGCTGAGATTTTGGCTGCAAATGTATCAGTTAGTCAAGGGAAATTGATATTAGCAATCACAGCTTTTGTTCAAGATGGTGATGATGGAAACAGTACCATTGAAAAGATTAAGAGAGAAATTATGAATTTGTAG 639 0.4241 MGSIRREAEELPLTVPPPLSQIPPPSSSVIDPSTIAEMGNTKASRKRGPQLGSTNNGESLKMERDRRLKMTQMFTQLRTTVPGVFPQATREVIINETIRYIKDLEKKKQRLEEIKESMKQVDGSLMLPCGNRNCSITVTVSSNVAFFGIQSVAQPGLITVILKVFCKHQAEILAANVSVSQGKLILAITAFVQDGDDGNSTIEKIKREIMNL* 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g04833 212 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 54 104 IPR011598 GO:0046983
Rops2g04833 212 Pfam Helix-loop-helix DNA-binding domain 61 105 IPR011598 GO:0046983
Rops2g04833 212 Gene3D - 56 127 IPR036638 GO:0046983
Rops2g04833 212 ProSiteProfiles ACT domain profile. 146 212 IPR002912 -
Rops2g04833 212 PANTHER BHLH DOMAIN-CONTAINING PROTEIN 59 190 IPR044278 GO:0003700|GO:0006355|GO:0009960
Rops2g04833 212 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 62 120 IPR036638 GO:0046983
Rops2g04833 212 MobiDBLite consensus disorder prediction 26 58 - -
Rops2g04833 212 MobiDBLite consensus disorder prediction 1 62 - -
Rops2g04833 212 SMART finulus 60 110 IPR011598 GO:0046983
Rops2g04833 212 Coils Coil 94 124 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g04833 18 112 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G49770 29.474 4.54e-07 47.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Rops2g04833 HLH 4.5e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g04833 - - gmx:102670256 245.743
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g04833 2 87504624 87505522 Rops2g04833 2 87504624 87505522 ECH