Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g04817 ATGGCGAGGTATCGAAGCCGGAGCAGAAGCTATAGCCCTCGCCGGCGTAGCAGAACCCCACCGCGCGGACGCAAGCGTAACGACGACGATCGCTACGGTGACAGCAGGTCTTACAGAGACCGTCGTTCTCCTCTTCCTTCGGGATTGCTCGTTCGTAATCTTCCCCTTGATGCTAGGCCTGAAGATCTCAGGGCCCCATTCGAGCGTTACGGTCCTGTGAAGGATGTTTATCTTCCAAGAAATTACTACACTGGTGAGCCTCGGGGATTTGGATTTGTGAAATATCGATACGGGGAAGATGCAGCTGAGGCAAAGCAACATCTTAATCATACTATCATTGGTGGACGTGAAATAAGAATTGTGTTTGCTGAGGAAAACAGGAAAACTCCTCAAGAAATGCGTGTAAGTTCCCGTGGAAGTGGTCGACAGGGAGGTGGTAGACGGAGGGCTCGATCAAGATCCCCAAGACGCCGATATCGTTCCTACTCTAGGTCTCCATCACCAGCCAGGGATGATTCAAGGGATGGCAGGGGTAGGGATGATTATTATTCTCCTGAGAAATCAAGATCTTTTTCTAGGTCTCTCTCCCCTAGTGGTGGGAAGGACTACAGGCGGTCCCCGCATCCCAGGGAGAATGGTCGGAGTCCCAATGACAAGAAGGATCGGTCACCTAGCAGATCTCTGAGTCCTAGGGGTAATGATCACAGTCCTTCGAGATCTCGTTCACGGTCATACAGTCCACGGTGA 747 0.5167 MARYRSRSRSYSPRRRSRTPPRGRKRNDDDRYGDSRSYRDRRSPLPSGLLVRNLPLDARPEDLRAPFERYGPVKDVYLPRNYYTGEPRGFGFVKYRYGEDAAEAKQHLNHTIIGGREIRIVFAEENRKTPQEMRVSSRGSGRQGGGRRRARSRSPRRRYRSYSRSPSPARDDSRDGRGRDDYYSPEKSRSFSRSLSPSGGKDYRRSPHPRENGRSPNDKKDRSPSRSLSPRGNDHSPSRSRSRSYSPR* 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g04817 248 MobiDBLite consensus disorder prediction 1 47 - -
Rops2g04817 248 SMART rrm1_1 48 121 IPR000504 GO:0003723
Rops2g04817 248 ProSitePatterns Protamine P1 signature. 2 12 IPR000221 GO:0000786|GO:0003677|GO:0005634|GO:0007283|GO:0035092
Rops2g04817 248 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 47 125 IPR000504 GO:0003723
Rops2g04817 248 MobiDBLite consensus disorder prediction 203 228 - -
Rops2g04817 248 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 49 119 IPR000504 GO:0003723
Rops2g04817 248 MobiDBLite consensus disorder prediction 22 41 - -
Rops2g04817 248 MobiDBLite consensus disorder prediction 229 248 - -
Rops2g04817 248 MobiDBLite consensus disorder prediction 164 187 - -
Rops2g04817 248 MobiDBLite consensus disorder prediction 125 248 - -
Rops2g04817 248 MobiDBLite consensus disorder prediction 1 21 - -
Rops2g04817 248 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 48 243 - -
Rops2g04817 248 MobiDBLite consensus disorder prediction 144 160 - -
Rops2g04817 248 FunFam Serine/arginine-rich SC35-like splicing factor SCL28 2 139 - -
Rops2g04817 248 Gene3D - 2 135 IPR012677 -
Rops2g04817 248 SUPERFAMILY RNA-binding domain, RBD 49 153 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g04817 Rops-Chr2 87270694 87275413 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g04817 51 109 Eukaryotic Initiation Factors Gene Family AT3G11400 44.068 8.75e-07 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g04817 K12900 - gmx:100788749 294.278