Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g04794 ATGGCTTCCGTTTCATCGAGTCCACGCACCGTTGAAGAGATCTTCAAGGACTACCACGCTCGACGCAATGCTCTCCTTCGTGCCCTCACCTATGATGTTGACGAGTTCTATTCCCTTTGTCATCCGGGTAAAGCTCATCTCTTTCTTTTCATTTTCCATGTCTGTGTTGTAAAGGTTCTTCGAGATGGTAGATGGAGCGAGCAAGATGCTGCGGTCTTGGTTCCTGGTGACATAGTTAGCATCAAACTTGGAGATATCGTACCAGCTGATGCTCGTCTTCTTGAAGGGGATCCTTTGAAAATTGAACAGGGCCCTGGTGATGGTGTGTATTCTGGTTCCACCTGCAAGCAAGGAGAGATTGAAGCTGTGGTCGTTGCAACCGGTGTTCATACCTTTTTTGGGAAAACTGCTCACCTTGTAGATACCACTAATCAAGTGGGACACTTTCAAAAGGTCTTGACTGCTATTGGGAACTTCTGCATATGTTCAATTGCTGTGGGGATGATTATTGAGATTATTGTTATGTACCCCATCCAAGATCGGAAGTATCGCCCTGGAATTGATAACCTTCTTGTACTTCTTATTGGGGGAATTCCAATTACCATGCCCACTGTTCTCTCAGTGACCATGGCCATTGGTTCTCATAGGCTATCTCAGCAGGGGGCTATCACAAAGAGGATGACAGCTATTGAAGAGATGGCAGGCATGGATGTGCTTTGCAGTGATAAGACTGGAACTTTAAAATCTAATGACCAGTCGCTGGATAGCTTCTCAGCAGAAGTTATCTCAAAGAACAGGAGGAAGGCTACGACTGAGATGATGTGCATGCGCTGCCTTCAAATACAGCCTGTTGGACCAGTTTGTGCAACACCTTCCTGTGGTCGTCTCCCAATGGCAAAGTACTACTGTAGTATTTGCAAATTTTTTGATGATGAAAGGATGGTTTATCATTGCCCTTTCTGCAATCTATGCCGTGCAGGAAAGGGACTTGGTGTTGACTTCTTTCATTGCATGCAGTGTAATTGTTGCTTGTCAATGAAATTGGTTGATCACCTTTGCCGAAAAAGGTTTAGAAACAAAGCGCCCCATCTCGGTGATATTTTGTTCACATCCAGTGCATCTGTCAGGGCTCTCCCTTGTGGCCATTTCATGCATTCTGCTTGCTTTCAGGCACGAGTTGGCATCCAAGAAATACATTTTCTTCCTTTCAATCCTACTGATAAGCGGACAACATTGACTTATATTGATCGTGATGGTAAAATGCATAGAGTTAGCAAAGGTGCACCTGAACAGAAGTTCCGTGATGGAAGGAAAGAGAGTCTTTGGAGGCCCATGGCGCTTATTGGCCTTATGCCTCTGTTTGACCCACCTAGGCATGACAGTGCAGAAACAATAAGGAGGGCACTAAACCTTGGAGTAAATGTCAAAATGATTACAGGGGATCAACTAGCTATAGGAAAGGAAACAGGTCGCCGCTTGGGAATGGGTACCAATATGTATCCTATTCCAGTAATTGTTCAAGAAATTTCACAAGATGTAATAATGGATCTTGCAGCCCGCTTAAGGTCTTTTGCATTGAGTTTTCGTCTCGAAGAGCCACTAGTACTCGATATTCAAGCTCCACCATCACCTTCACTAGGACCCCATTCACCTAAGTTGGATTAG 1665 0.4468 MASVSSSPRTVEEIFKDYHARRNALLRALTYDVDEFYSLCHPGKAHLFLFIFHVCVVKVLRDGRWSEQDAAVLVPGDIVSIKLGDIVPADARLLEGDPLKIEQGPGDGVYSGSTCKQGEIEAVVVATGVHTFFGKTAHLVDTTNQVGHFQKVLTAIGNFCICSIAVGMIIEIIVMYPIQDRKYRPGIDNLLVLLIGGIPITMPTVLSVTMAIGSHRLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLKSNDQSLDSFSAEVISKNRRKATTEMMCMRCLQIQPVGPVCATPSCGRLPMAKYYCSICKFFDDERMVYHCPFCNLCRAGKGLGVDFFHCMQCNCCLSMKLVDHLCRKRFRNKAPHLGDILFTSSASVRALPCGHFMHSACFQARVGIQEIHFLPFNPTDKRTTLTYIDRDGKMHRVSKGAPEQKFRDGRKESLWRPMALIGLMPLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIGKETGRRLGMGTNMYPIPVIVQEISQDVIMDLAARLRSFALSFRLEEPLVLDIQAPPSPSLGPHSPKLD* 555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g04794 554 Gene3D - 128 236 - -
Rops2g04794 554 Gene3D - 438 454 IPR023299 GO:0000166
Rops2g04794 554 Gene3D - 252 269 IPR023299 GO:0000166
Rops2g04794 554 Gene3D - 380 433 IPR023299 GO:0000166
Rops2g04794 554 SUPERFAMILY Calcium ATPase, transmembrane domain M 140 234 IPR023298 -
Rops2g04794 554 PRINTS P-type cation-transporting ATPase superfamily signature 471 481 - -
Rops2g04794 554 PRINTS P-type cation-transporting ATPase superfamily signature 240 254 - -
Rops2g04794 554 PRINTS P-type cation-transporting ATPase superfamily signature 449 460 - -
Rops2g04794 554 Gene3D - 57 127 - -
Rops2g04794 554 ProSiteProfiles Zinc finger CTCHY-type profile. 298 361 IPR017921 -
Rops2g04794 554 SUPERFAMILY HAD-like 228 497 IPR036412 -
Rops2g04794 554 Pfam E1-E2 ATPase 57 219 - -
Rops2g04794 554 SUPERFAMILY Calcium ATPase, transduction domain A 57 140 IPR008250 -
Rops2g04794 554 NCBIfam HAD-IC family P-type ATPase 58 258 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Rops2g04794 554 PANTHER CALCIUM-TRANSPORTING ATPASE 442 502 - -
Rops2g04794 554 Pfam Alfin 10 52 IPR021998 GO:0006355|GO:0042393
Rops2g04794 554 Gene3D - 455 510 IPR023214 -
Rops2g04794 554 Gene3D - 237 251 IPR023214 -
Rops2g04794 554 SUPERFAMILY Zinc hairpin stack 299 353 IPR037275 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g04794 Rops-Chr2 86844276 86854080 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g04794 58 517 Primary Pumps ATPases AT1G80660 52.917 1.20e-145 441
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g04794 K01535 - nnu:104596580 371.318