Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g04769 ATGGCACTGCTGGTACCTAGTACATCTACACCCCAAATCGAATCGCTTCGGCGGTGTAGAAATTTGAAGGTTTCAGTGTCAGAGATTCCTTTTTCAACGTCAACAAAATGCCGAAGCATTCTTTCAGTATCAATTTCTGCCTCTACTTCTCTTCGCTACGCACCGTTTCCAAGGTTTTGCTGCAGAGCCAGCTCCGACCCCAGCTCTTCCGGCGAATGTAATATGTCTTCTTCAACCCAAATCTTTATCAAAGGGTTTCCTCTCTCAACCTCTGGAGGACATTTAATGAAGGTGTTTTCAGAGTTTGGTGAAGTTACTCGAGTCAAGCTTCCAATAGATAAAGAATCTGGGCAGTCTTTAGGATTTGCCTATATTTGGTTTGTCAAGGAAGAGTCAGCACAATCGGCTGTGAAAGAGATGAATGGAAAGTTTTTTTATGGCAGGTTTATTCATGTTACAATTGCAAATCCCTTATTATCAAAAAGTCAGAAGAGGACAACAGCTTACAAATTTTAA 516 0.4128 MALLVPSTSTPQIESLRRCRNLKVSVSEIPFSTSTKCRSILSVSISASTSLRYAPFPRFCCRASSDPSSSGECNMSSSTQIFIKGFPLSTSGGHLMKVFSEFGEVTRVKLPIDKESGQSLGFAYIWFVKEESAQSAVKEMNGKFFYGRFIHVTIANPLLSKSQKRTTAYKF* 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g04769 171 Gene3D - 61 168 IPR012677 -
Rops2g04769 171 SMART rrm1_1 80 153 IPR000504 GO:0003723
Rops2g04769 171 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 81 151 IPR000504 GO:0003723
Rops2g04769 171 PANTHER RNA-BINDING MOTIF PROTEIN, X-LINKED 2 67 165 - -
Rops2g04769 171 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 79 157 IPR000504 GO:0003723
Rops2g04769 171 SUPERFAMILY RNA-binding domain, RBD 69 159 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g04769 Rops-Chr2 86440286 86445207 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g04769 42 157 Eukaryotic Initiation Factors Gene Family AT3G11400 30.508 6.04e-11 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g04769 - - psat:127073405 196.438
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g04769 2 86440286 86445207 Rops2g04769 2 86440286 86445207 ECH