Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g04748 ATGGCAAATTTTATCTCTTCATCTTCTTATTCTCCTCCATCTCTATCGCACATTTCAGCTCCTTCATCTTCTGCGGCTTTCGACGATAGTTCGGAGGATGCCTGCAGCATATGTCTTGAGCCTTTCAACACTGATGACCCTGCCACCATTACCAGTTGCAAACACGAATATCATCTGCATTGTATTATTGAATGGTCTCAGAGAAGCAAAGAGTGCCCTATATGTTTGCAATTACTTATCTTGAAAGACCCTTCCAGCCAAGAGCTTCTAACTGCAGTGGAGGCTGAAAAATGCTTAAGATCAAGAAATGTATATTCATATGCATCCACGAATTCTAGTAGCCCCCTTGAACAGCTAAAAGATGACCATGATGGTTCTAGTTCAGATGACTCTATTTTTGATAAGCAACTTATGCAGCACACAATTGCTGCTGCAAGGAGAGCTCGTTACATCACCAGACAGGAATGGCAGATGTCTCCTGGAGCTGGTCCATCAGAGTTTCTTGTTTTTAACTCTGATGTGGATGCTTTTGGGATGCAGCCAACACTTGCAACTTCACCTTCTGAGGGTAGTTCACCAACTTCTGGTGTACCATCTGCTGCTCACATTCAACCTCCACCATCTGCTTTTCCCCCTGTTGACATGGTTGCAAGAAATTCTACTACTAAGAATGATGTCACTTTCAAACCCAGCCAGCCGCCACCTGAGAGTGCAAGGAGACTAAACACTTCTGAGATGTTCTCCTTCCCTGAGTCCTTCAAATTCAAACTTTCTGCTGCTTCAGCCAGATATAAGGAATCAATTTCAAAAAGTACCCGTGGTCTTAAAGAGAAGATAATTGCTCGTAATGCCTCAGTGAAAGAGCTGAGTAAAGGTGTTCAGCGTGAGATGAATGCAGGCATTGCAAATGTTGCACGAATGATTGAACGCCTTGATCTTACCTCAAAACGCTCCACGTCTCCTCTCATCCCTGTCTTTACTGGGGGGACGTCTGGCTTCCCTGTAAAAGAAGAGTCTTTCCATGAGAACAATATTGAGAAGTTACATAATGAAGAGAGTGGAGTTTTGGTTCATAATGTTAGTGCTGATGCTCCCTCACTCGATTCTAGCTTGGTTACTGGTGGAGTGGAAATTTCTCCTCCATGTGTTCAGAGTGGACATGATGCTGTGAAGACTTGA 1179 0.4368 MANFISSSSYSPPSLSHISAPSSSAAFDDSSEDACSICLEPFNTDDPATITSCKHEYHLHCIIEWSQRSKECPICLQLLILKDPSSQELLTAVEAEKCLRSRNVYSYASTNSSSPLEQLKDDHDGSSSDDSIFDKQLMQHTIAAARRARYITRQEWQMSPGAGPSEFLVFNSDVDAFGMQPTLATSPSEGSSPTSGVPSAAHIQPPPSAFPPVDMVARNSTTKNDVTFKPSQPPPESARRLNTSEMFSFPESFKFKLSAASARYKESISKSTRGLKEKIIARNASVKELSKGVQREMNAGIANVARMIERLDLTSKRSTSPLIPVFTGGTSGFPVKEESFHENNIEKLHNEESGVLVHNVSADAPSLDSSLVTGGVEISPPCVQSGHDAVKT* 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g04748 392 ProSiteProfiles Zinc finger RING-type profile. 35 75 IPR001841 -
Rops2g04748 392 Pfam Ring finger domain 34 75 IPR001841 -
Rops2g04748 392 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 23 84 - -
Rops2g04748 392 MobiDBLite consensus disorder prediction 180 201 - -
Rops2g04748 392 FunFam E3 ubiquitin-protein ligase RHF1A 20 87 - -
Rops2g04748 392 SMART ring_2 35 75 IPR001841 -
Rops2g04748 392 SUPERFAMILY RING/U-box 29 82 - -
Rops2g04748 392 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 20 89 IPR013083 -
Rops2g04748 392 MobiDBLite consensus disorder prediction 180 213 - -
Rops2g04748 392 MobiDBLite consensus disorder prediction 109 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g04748 Rops-Chr2 86097468 86100843 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g04748 5 83 C3H Transcription Factor Family AT4G00335 36.709 1.94e-13 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g04748 K19043 - gmx:100785684 459.914