Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g04747 ATGTCTCACATGGACACTCGCACTTTCTCAGTCTCGCCTCTTCTCACTTTACGTGTTCTTTCATCTGAAAAGCCATCTTCTCCCACTTCCTATATTCCTCCTCGTTCACTTAAACTCTTCTTCTCCACTAACCTAAAACGCATCTCTAATTCCACAACTCCACTAGCCATTCTAAACCCTCCTTCTCCCTCAACCTCTCCAGCGTATGATGCAGTGACCAATCCCACTCTGAGACAAATATGCCAACCTCATGTTCCCGACCATATACTGCAAAGGATGGAAGAGATTGGATATGTGATTCCTACAGATATCCAGAGGCAAGCATTGCCTTCTCTTTTTTCAGGGCGTGACTGCATACTTCATGCTCAGACAGGTTCTGGGAAGACACTTACATACCTGCTTTTGATCTATTCCATCATCAACACTAGAAAATCTTCTGTGCAAGCACTAGTTTTGGTGCCCACCCGGGAACTTGGCATGCAAGTCACTAAGGTTGCTAGGATGTTGGCAGCAAAGCCAACTGGAGTTGAGGGGGAGCAGAAGTCATGCACCATCATGGCTCTGTTAGATGGAGGAACATTGAAAAGACACAAGAGTTGGTTAAAGGCAGAGCCTCCAACAGTAGTGGTTGCAACAGTTGGGAGTTTATGCCAAATGCTTGAAAGACAATTTTTTTCGCTTGAAACTGTGCGGATTCTGGTTGTTGATGAGGTTGACTTCATTTTCAATTCTTCAAAGCAAGTGAGTTTTCTTCGGAAGATTTTGACTTCGTATTCATCTTGCAATAACCGTCAGACTGTTTTTGCCAGTGCATCTATACCACAGCACAAACGATTTGTTCACGACTGTATGCAGCAGAAATGGACTAAGAGTGATGTGATCCATATTCATGTCAGCCAAGTGGAGCCCATGCCATCTCGCCTATATCATAGATTTATAATATGTGATACGAAAAGAAAACTACAAACCCTGTTATCCTTGATACAATCTGATGCACCTGAGTCTGGCATTATATTTGTTGGTGAGCAGTCTGAGAAGTCGAAAAAGGCTGGAAACGCTCCATCTACATCCCTTGTTATTGACTTTCTTAAAACATCATATCAAGGTTCTTTAGATATCCTCCTTCTCGAAGGTGACATGAACTTCAATTCACGAGCAGCTTCTCTGTTGGAGGTTAAAAAAGGAGGTGGCCATCTCCTTGTGGCAACAGATATAGCTGCTAGAGGGGTTGACCTTCCAGAAGTGTCTCACATATACAACTTTGATCTGCCAAGGACTGCCACAGATTATCTTCATCGAGCAGGGAGGACTTGTAGAAAACCCTTTTCTGACATGAATTGTACTGTTACCAGCATCATAGTTCAAGAGGAGCGGTTTGTTCTGCGGAAATATGAAAATGAGTTGATGTTTAGTTGTGAAGAGCTTATTCCATAA 1434 0.4296 MSHMDTRTFSVSPLLTLRVLSSEKPSSPTSYIPPRSLKLFFSTNLKRISNSTTPLAILNPPSPSTSPAYDAVTNPTLRQICQPHVPDHILQRMEEIGYVIPTDIQRQALPSLFSGRDCILHAQTGSGKTLTYLLLIYSIINTRKSSVQALVLVPTRELGMQVTKVARMLAAKPTGVEGEQKSCTIMALLDGGTLKRHKSWLKAEPPTVVVATVGSLCQMLERQFFSLETVRILVVDEVDFIFNSSKQVSFLRKILTSYSSCNNRQTVFASASIPQHKRFVHDCMQQKWTKSDVIHIHVSQVEPMPSRLYHRFIICDTKRKLQTLLSLIQSDAPESGIIFVGEQSEKSKKAGNAPSTSLVIDFLKTSYQGSLDILLLEGDMNFNSRAASLLEVKKGGGHLLVATDIAARGVDLPEVSHIYNFDLPRTATDYLHRAGRTCRKPFSDMNCTVTSIIVQEERFVLRKYENELMFSCEELIP* 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g04747 477 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 47, MITOCHONDRIAL 73 470 - -
Rops2g04747 477 Pfam Helicase conserved C-terminal domain 320 439 IPR001650 -
Rops2g04747 477 Pfam DEAD/DEAH box helicase 102 275 IPR011545 GO:0003676|GO:0005524
Rops2g04747 477 CDD SF2_C_DEAD 310 439 - -
Rops2g04747 477 Gene3D - 69 290 IPR027417 -
Rops2g04747 477 CDD DEADc 89 285 - -
Rops2g04747 477 SMART helicmild6 357 441 IPR001650 -
Rops2g04747 477 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 110 443 IPR027417 -
Rops2g04747 477 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 320 477 IPR001650 -
Rops2g04747 477 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 109 291 IPR014001 -
Rops2g04747 477 SMART ultradead3 97 312 IPR014001 -
Rops2g04747 477 Gene3D - 305 476 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g04747 Rops-Chr2 86090910 86096374 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g04747 56 460 Eukaryotic Initiation Factors Gene Family AT1G72730 27.981 6.31e-32 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g04747 - - gmx:100786205 742.651