Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g04737 ATGATGCAGCCTGGACCTGGCATGGCTCCACCCACCATGGCCCAACAACCCAACCAGCAATACCAACAGCCTCAACAGCAGCAACAACCCTACATGATGATGCCACCTCAGGCTCAGCCTCAGGCTCCTCCGATGTGGGCCCCATCTGCCCAACCACCACCTCAGTCGGTGCCTCCTCCGCAATCGGTTCCACCGGCCAGCGCCGATGAGGTCCGAACCCTCTGGATCGGCGATTTGCAGTACTGGATGGACGAGAACTATATCTTCTCTTGTTTCGCTCACACCGGCGAGGTGTCTTCTGTCAAGGTTATTCGGAATAAACAAACTAGCCAATCAGAAGGTTATGGGTTTATTGAGTTTACTAGCCGTGCTGGTGCTGAGAGAGTACTTCAGACTTATAATGGTACCATTATGCCGAATGGAGGGCAGAACTTTAGGTTGAACTGGGCAACTTTTAGTGCGGGTGAGAGGCGTCATGATGATACTCCAGATCACACCATTTTTGTTGGAGACTTGGCTGCGGATGTTACTGATTATCATCTGCAAGAAGTGTTTAGGACTCGGTATTCCTCTGTGAAGGGTGCTAAAGTTGTGATTGATAGGCTTACTGGCAGGACAAAGGGCTATGGTTTTGTTAGGTTTGGAGATGAGAGTGAACAGGTTAGGGCTATGACTGAAATGCAAGGGGTTCTTTGTTCAACAAGGCCCATGCGGATTGGACCAGCCTCTAACAAAAACCCTGGCACTCAGCCAAAAGCGTCATATCAGAATCCTCAAGGGGCACAGAACGAGAATGATCCAAATAATACAACTATCTTTGTCGGCAATTTGGATCCCAATGTTACTGATGATCATTTGAGACAAGTTTTTGGGCAGTATGGAGAGCTAGTTCATGTGAAGATTCCAGCAGGCAAGAGATGTGGGTTTGTCCAATTTGCGGACAGGAGCTGCGCAGAGGAGGCATTGCGAGTTTTAAATGGTACACTTTTAGGTGGGCAAAATGTTCGGCTTTCATGGGGCCGAAGTCCTTCAAACAAACAGACTCAACAAGATCCAAACCAGTGGAATGGTAGTGGATATTATGGATATGCTCAGGGTTATGAAAATTATGGTTATGCTCCTGCTGGACAGGACCCCAATATGTATGGCAGTTATCCAGGGTATGCAAATTACCAACCTCCTCAGCAACAGCAGCAGATGGGATATAGTTGA 1212 0.481 MMQPGPGMAPPTMAQQPNQQYQQPQQQQQPYMMMPPQAQPQAPPMWAPSAQPPPQSVPPPQSVPPASADEVRTLWIGDLQYWMDENYIFSCFAHTGEVSSVKVIRNKQTSQSEGYGFIEFTSRAGAERVLQTYNGTIMPNGGQNFRLNWATFSAGERRHDDTPDHTIFVGDLAADVTDYHLQEVFRTRYSSVKGAKVVIDRLTGRTKGYGFVRFGDESEQVRAMTEMQGVLCSTRPMRIGPASNKNPGTQPKASYQNPQGAQNENDPNNTTIFVGNLDPNVTDDHLRQVFGQYGELVHVKIPAGKRCGFVQFADRSCAEEALRVLNGTLLGGQNVRLSWGRSPSNKQTQQDPNQWNGSGYYGYAQGYENYGYAPAGQDPNMYGSYPGYANYQPPQQQQQMGYS* 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g04737 403 MobiDBLite consensus disorder prediction 12 35 - -
Rops2g04737 403 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 165 244 IPR000504 GO:0003723
Rops2g04737 403 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 72 152 IPR000504 GO:0003723
Rops2g04737 403 Gene3D - 252 351 IPR012677 -
Rops2g04737 403 MobiDBLite consensus disorder prediction 239 270 - -
Rops2g04737 403 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 270 342 IPR000504 GO:0003723
Rops2g04737 403 SUPERFAMILY RNA-binding domain, RBD 255 366 IPR035979 GO:0003676
Rops2g04737 403 MobiDBLite consensus disorder prediction 1 67 - -
Rops2g04737 403 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 74 139 IPR000504 GO:0003723
Rops2g04737 403 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 167 230 IPR000504 GO:0003723
Rops2g04737 403 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 272 335 IPR000504 GO:0003723
Rops2g04737 403 FunFam Polyadenylate-binding protein RBP45C 157 248 - -
Rops2g04737 403 SUPERFAMILY RNA-binding domain, RBD 160 257 IPR035979 GO:0003676
Rops2g04737 403 Gene3D - 156 251 IPR012677 -
Rops2g04737 403 FunFam Polyadenylate-binding protein RBP45 10 156 - -
Rops2g04737 403 CDD RRM1_SECp43_like 73 153 - -
Rops2g04737 403 CDD RRM2_SECp43_like 164 243 - -
Rops2g04737 403 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 61 346 - -
Rops2g04737 403 MobiDBLite consensus disorder prediction 383 403 - -
Rops2g04737 403 FunFam Polyadenylate-binding protein RBP45C 249 374 - -
Rops2g04737 403 SUPERFAMILY RNA-binding domain, RBD 33 153 IPR035979 GO:0003676
Rops2g04737 403 MobiDBLite consensus disorder prediction 36 65 - -
Rops2g04737 403 MobiDBLite consensus disorder prediction 389 403 - -
Rops2g04737 403 MobiDBLite consensus disorder prediction 236 270 - -
Rops2g04737 403 MobiDBLite consensus disorder prediction 338 357 - -
Rops2g04737 403 SMART rrm1_1 271 338 IPR000504 GO:0003723
Rops2g04737 403 SMART rrm1_1 73 148 IPR000504 GO:0003723
Rops2g04737 403 SMART rrm1_1 166 240 IPR000504 GO:0003723
Rops2g04737 403 Gene3D - 8 155 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g04737 Rops-Chr2 85927257 85930979 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g04737 73 349 Eukaryotic Initiation Factors Gene Family AT4G34110 27.660 1.54e-28 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g04737 - - gmx:100796848 643.269