Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g04707 ATGGACAAAGGATGGGGTCTCACCCTTCTTGATTCCTCTTATTCTTCTTCTTCTTCCTCTTCCTTTCCCTTCTTCCCTTCTTCCTCTACTAAGCTCACCCACACCATCATGTTCCCCACTTTGGGATTCCCAGTTAATCTTGGCCGTTCCACCACTGCTCCCTCTCCGCCGTCTGATCATAATCAGATGGTCCTCGGTGAAGTCGACTTCTTCTCTGATAGAAACAAGTCATCATCACCTCAACATGATGACACCAACGTCAAGAAGGAGATTTCTGATCCTCATGGAACCCCTCCCAAGTGTGATCTTCATGTAGATACTGGTTTACAGCTTCTTACTGCTAACACTGGGAGTGATCAATCAACGATGGATGATGGGGCTTCACCGGAAGCTGAAGATAAGCGTGCCAAGATCACCGAGCGAGAGAGATTGCAAGAGGACGTTCGACGTATGAACGCGGAGAACCAAAAGCTGAAGGAGATGCTCAGCCATGTGAGTAGTGACTACACCAACTTGCAAATGCATCTCTTGTCATTAATGCAACAGCAACAGAACCACCGTACCCAGAACACAGAACATGAGGTTGTTCAAGGAAAAACTGAGGAGAAAAACCATGGGGTTAGTGGAGGAATGGTGCCTAAACAGTTCCTTGATTTAGGTCCCAGTGGTACAGCCGAAATAGATGATCATGTATCTAATTCTTCTTCGGATGAAAGAACCCGATCAAGCACACCCCAGAACTATAAAAACGAGAAGGATAAGAAAGAGACTGAACCAGAGTCAGAATCACAAGGTTGGGACCCGAATAGCCTTCAGAAATTGAACCCCTCCAATACTACGGATCAATCCACTGCAGAAGCCACTATGAGAAAAGCTCGTGTCTCAGTCCGTGCCCGATCAGAAGCATCCATGATCAGTGATGGATGCCAATGGCGAAAATATGGACAAAAAATGGCTAAGGGAAACCCTTGTCCTCGAGCATATTATAGATGCACAATGGCAGTTGGTTGCCCAGTTCGCAAACAAGTTCAGCGTTGTGCTGAGGACAGAACAATTTTGATAACGACATATGAAGGAACACATAACCATCCACTGCCACCTGCTGCTATGGCCATGGCATCGACCACTGCAGCTGCTGCTAGCATGTTACTGTCTGGGTCAATGTCAAGTGGTGATGGAATGATGAACCCCAATTTGCTAGCAAGAGCTATTCTTCCTTGCTCTTCTAGCATAGCCACACTTTCAGCTTCAGCACCATTCCCTACTGTGACACTGGACCTTACACAAAACCCAAATAACTCATTGCAGTGCCAAAGACCTTCTGCCCCATTTCAGCTAGCATTAGCTCAGAACTTTGGGTCAGGACAACTGCCACAGGTGATTGCACAGGCACTCTATAACCAATCCAAATTCTCTGGCCTTCAGTTATCTCAGGATGTGGGGTCTTCCCGATTGACTCCAAAAGCTTCAACACCGTTGCAACAGGCTTCGCTGGCTGACACTGTTAGTGCCGCCACCGCAGCCATTGCCGTGGACCCAAACCTCACGGCAGCACTCACGGCTGCTATCTCCTCCATCATCGCCGGTGCTCATTCAAACAACAATGCAAATAACAATAACAGTGATCCCAATATCATCAACAGTGCTACAATCAATAGTTTTTCATAA 1668 0.4694 MDKGWGLTLLDSSYSSSSSSSFPFFPSSSTKLTHTIMFPTLGFPVNLGRSTTAPSPPSDHNQMVLGEVDFFSDRNKSSSPQHDDTNVKKEISDPHGTPPKCDLHVDTGLQLLTANTGSDQSTMDDGASPEAEDKRAKITERERLQEDVRRMNAENQKLKEMLSHVSSDYTNLQMHLLSLMQQQQNHRTQNTEHEVVQGKTEEKNHGVSGGMVPKQFLDLGPSGTAEIDDHVSNSSSDERTRSSTPQNYKNEKDKKETEPESESQGWDPNSLQKLNPSNTTDQSTAEATMRKARVSVRARSEASMISDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRTILITTYEGTHNHPLPPAAMAMASTTAAAASMLLSGSMSSGDGMMNPNLLARAILPCSSSIATLSASAPFPTVTLDLTQNPNNSLQCQRPSAPFQLALAQNFGSGQLPQVIAQALYNQSKFSGLQLSQDVGSSRLTPKASTPLQQASLADTVSAATAAIAVDPNLTAALTAAISSIIAGAHSNNNANNNNSDPNIINSATINSFS* 556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g04707 555 Pfam WRKY DNA -binding domain 307 364 IPR003657 GO:0003700|GO:0006355|GO:0043565
Rops2g04707 555 MobiDBLite consensus disorder prediction 244 262 - -
Rops2g04707 555 SUPERFAMILY WRKY DNA-binding domain 298 366 IPR036576 GO:0003700|GO:0006355|GO:0043565
Rops2g04707 555 Gene3D WRKY domain 290 367 IPR036576 GO:0003700|GO:0006355|GO:0043565
Rops2g04707 555 MobiDBLite consensus disorder prediction 181 298 - -
Rops2g04707 555 MobiDBLite consensus disorder prediction 114 143 - -
Rops2g04707 555 MobiDBLite consensus disorder prediction 72 102 - -
Rops2g04707 555 Coils Coil 134 168 - -
Rops2g04707 555 MobiDBLite consensus disorder prediction 76 100 - -
Rops2g04707 555 ProSiteProfiles WRKY domain profile. 300 366 IPR003657 GO:0003700|GO:0006355|GO:0043565
Rops2g04707 555 MobiDBLite consensus disorder prediction 534 555 - -
Rops2g04707 555 FunFam probable WRKY transcription factor 31 290 367 - -
Rops2g04707 555 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 107 540 IPR044810 GO:0003700
Rops2g04707 555 MobiDBLite consensus disorder prediction 263 289 - -
Rops2g04707 555 SMART WRKY_cls 305 365 IPR003657 GO:0003700|GO:0006355|GO:0043565
Rops2g04707 555 MobiDBLite consensus disorder prediction 127 143 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g04707 Rops-Chr2 85403130 85405877 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g04707 59 540 WRKY Transcription Factor Family AT1G62300 57.171 1.15e-153 449
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Rops2g04707 WRKY 5.7e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g04707 - - gmx:100802124 634.024
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g04707 2 85403130 85405877 Rops11g01077 11 15835159 15842311 PCT