Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g04705 ATGGCCACCTCAACCTCACTCCTCTTGCTTTCATGCTTCTTACTACACCTTGCTTTAAGCTTTGTTAATGTCTATTCTCACCCCATTTCAAAGTATATCCCCAATAGTCCTAAGAAACCATTGCTCAACAACATAGACTCTTGCTGGCGAGGCAAATCAAATTGGGCATCAAATCGTCGAGCCTTGGCTGATTGTGCAATTGGTTTTGGCAAAGATGCCATTGGAGGAAAATATGGTGCAATATATGTAGTAACAGATCCCTCTGATGACCCTGCAAACCCAAAACCAGGCACACTTCGTTATGGTGCAATACAAACGAAGCCACTTTGGATCATTTTTAACAGGGACATGGTTATTATCCTTAAGAATGAGCTTATCATGAATAGCTACAAAACCATTGATGGGAGAGGAGCTAAAGTGGAGATTGCATATGGGCCTTGTATTACTATACAAGGTGTTAGCCATGTTATTATGCATGGCATTAGTATCCATGATTGTAAACCAAGCAAGGCTGGCCTAGTGAGAAGTACTCCTGACCATGTTGGCCATCGTCAAGGCTCTGATGGAGATGCCATTAGTATATTTGCTTCCTCAAATGTTTGGATTGATCATTGCTTTTTGGCTCGTTGTGCTGATGGCCTAATTGATATTATTCATGCCTCAACTGCCATAACCATTTCTAACAATTACTTCACACAACATGACAAAGTTATGTTGCTAGGACACAATGACCAATACTCAGCAGATAAAATAATGAAAGTGACAATTGCCTTCAACCGGTTTGCTAGTGGCCTAATTGAAAGGATGCCAAGGGTAAGATTTGGTTATGTCCATGTGGTCAACAACAAATATGATGAATGGAAAATGTATGCTATAGGCGGCAGTGCAAACCCAACAATTTTAAGTGAAGGGAACTTTTACATAGCACCAAATGACCCAAATAAAAAGCAGGTTACCAAGAGGGAAGTGAAGGAAAATTGGAAGAGTTGGAAATGGAGGTCTTCTAAGGATGTATTCCTAAATGGTGCTTATTTTGTACCATCTGGATATGGAAGTTGTGCCCCAAATTATTCACCTACTCAATCTTTTACCGCTGCTCCAGCGTTCACGGTGCCTGCAATAACTCTCAATGCAGGTCCCTTGAGTTGTGTTGTTGGGAGAGCATGTTAG 1170 0.4111 MATSTSLLLLSCFLLHLALSFVNVYSHPISKYIPNSPKKPLLNNIDSCWRGKSNWASNRRALADCAIGFGKDAIGGKYGAIYVVTDPSDDPANPKPGTLRYGAIQTKPLWIIFNRDMVIILKNELIMNSYKTIDGRGAKVEIAYGPCITIQGVSHVIMHGISIHDCKPSKAGLVRSTPDHVGHRQGSDGDAISIFASSNVWIDHCFLARCADGLIDIIHASTAITISNNYFTQHDKVMLLGHNDQYSADKIMKVTIAFNRFASGLIERMPRVRFGYVHVVNNKYDEWKMYAIGGSANPTILSEGNFYIAPNDPNKKQVTKREVKENWKSWKWRSSKDVFLNGAYFVPSGYGSCAPNYSPTQSFTAAPAFTVPAITLNAGPLSCVVGRAC* 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g04705 389 PANTHER PECTATE LYASE 18-RELATED 41 387 IPR045032 GO:0030570
Rops2g04705 389 SUPERFAMILY Pectin lyase-like 63 388 IPR011050 -
Rops2g04705 389 Pfam Pectate lyase 124 307 IPR002022 -
Rops2g04705 389 Gene3D - 42 382 IPR012334 -
Rops2g04705 389 PRINTS Pollen allergen Amb family signature 268 287 IPR018082 -
Rops2g04705 389 PRINTS Pollen allergen Amb family signature 88 113 IPR018082 -
Rops2g04705 389 PRINTS Pollen allergen Amb family signature 360 383 IPR018082 -
Rops2g04705 389 PRINTS Pollen allergen Amb family signature 124 140 IPR018082 -
Rops2g04705 389 PRINTS Pollen allergen Amb family signature 290 309 IPR018082 -
Rops2g04705 389 PRINTS Pollen allergen Amb family signature 330 354 IPR018082 -
Rops2g04705 389 PRINTS Pollen allergen Amb family signature 188 209 IPR018082 -
Rops2g04705 389 PRINTS Pollen allergen Amb family signature 65 82 IPR018082 -
Rops2g04705 389 SMART amb_all 116 313 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g04705 Rops-Chr2 85361338 85362810 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g04705 9 389 Polysaccharide Lyase AT1G11920 68.490 0.0 552
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g04705 2 85361338 85362810 Rops2g04705 2 85361338 85362810 ECH
Rops2g04705 2 85361338 85362810 Rops11g01080 11 15879985 15882328 PCT