Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g04690 ATGGAGGGTACTTCTAATGGCACTTCTAGTTTGATGGCTTATGGAGAGAACAGTAATGGGCTTTGTCCAATGATGATGATGCCTTTAGTGACTTCTAATCATGGTGGTCATCATCCAATAAATCCGAATCTTAATAATACTAATGAAGACATAAATAGTCCCTTCCTTCCCATGCCTTGCACAAATAGTCACAACCCAAATCACAACACCACCAACTGCACTGGATTAGGGTATTTCATGGAGATCGACCACAATAACAACAACCACCACGATGGAAGCTCTTCTTCTTCCGATGTGAAGGCCAAGATCATGGCCCATCCTCATTATCACCGTCTCTTAGCAGCCTACGTCAATTGTCAAAAGATTGGGGCTCCACCTGAAGTGGTGGCAAGGTTAGAAGAAGCATGTGCATCTGCAGTGGGAATGGCAGGTGATCGAGCCTGCATCGGTGAGGATCCGGCGCTGGATCAGTTCATGGAAGGTTATTGTGAGATGCTGATCAAGTACGAGCAAGAGCTCTCAAAACCCTTCAAGGAAGCCATGCTCTTCCTTCAAAGGATTGAGTCTCAGTTCAAATCTCTCACAATTTCTTCAGATTTTGCTTGTAATGAAGCTACTGATAGGAATGGATCATCTGAAGATGTAGATCTACACAACAACATTATAGATCCTCAGGCAGAGGACCAAGAACTGAAGGTTCAACTCTTGCGCAAGTACAGTGGATACCTGGGAAGTTTGAAGCAGGAGTTCATGAAGAAGAGGAAAAAAGGGAAGCTGCCTAAAGAAGCAAGGCAAAAATTACTTGAATGGTGGAGCAGACATTACAAATGGCCTTACCCATCTGAATCACAGAAGCTGGCTCTTGCAGACTCCACAGGTCTGGATCAGAAGCAAATTAACAACTGGTTTATTAATCAAAGGAAACGGCATTGGAAGCCTTCAGAGGACATGCAATTTATGGTGGTGGATCCAAGCCATCCACATTACTACATGGACAATGTTCTTGGCAATCCCTTTCCCATGGATCTCTCCCACACAATGCTCTGA 1047 0.4422 MEGTSNGTSSLMAYGENSNGLCPMMMMPLVTSNHGGHHPINPNLNNTNEDINSPFLPMPCTNSHNPNHNTTNCTGLGYFMEIDHNNNNHHDGSSSSSDVKAKIMAHPHYHRLLAAYVNCQKIGAPPEVVARLEEACASAVGMAGDRACIGEDPALDQFMEGYCEMLIKYEQELSKPFKEAMLFLQRIESQFKSLTISSDFACNEATDRNGSSEDVDLHNNIIDPQAEDQELKVQLLRKYSGYLGSLKQEFMKKRKKGKLPKEARQKLLEWWSRHYKWPYPSESQKLALADSTGLDQKQINNWFINQRKRHWKPSEDMQFMVVDPSHPHYYMDNVLGNPFPMDLSHTML* 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g04690 348 ProSiteProfiles ELK domain profile. 230 250 IPR005539 GO:0003677
Rops2g04690 348 SMART KNOX2_2 145 196 IPR005541 GO:0003677|GO:0005634
Rops2g04690 348 ProSiteProfiles 'Homeobox' domain profile. 250 313 IPR001356 GO:0003677
Rops2g04690 348 SMART ELK_2 230 251 IPR005539 GO:0003677
Rops2g04690 348 SUPERFAMILY Homeodomain-like 252 328 IPR009057 -
Rops2g04690 348 ProSitePatterns 'Homeobox' domain signature. 288 311 IPR017970 GO:0000981|GO:0006355
Rops2g04690 348 Pfam ELK domain 230 251 IPR005539 GO:0003677
Rops2g04690 348 Pfam KNOX2 domain 148 195 IPR005541 GO:0003677|GO:0005634
Rops2g04690 348 Gene3D - 255 317 - -
Rops2g04690 348 SMART HOX_1 252 317 IPR001356 GO:0003677
Rops2g04690 348 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 50 319 - -
Rops2g04690 348 CDD homeodomain 262 314 IPR001356 GO:0003677
Rops2g04690 348 SMART KNOX1_2 97 141 IPR005540 GO:0003677|GO:0005634
Rops2g04690 348 Pfam KNOX1 domain 99 137 IPR005540 GO:0003677|GO:0005634
Rops2g04690 348 Pfam Homeobox KN domain 270 309 IPR008422 GO:0003677|GO:0006355
Rops2g04690 348 FunFam Homeobox protein knotted-1-like 2 255 317 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g04690 Rops-Chr2 85224830 85230621 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g04690 79 348 Homeobox Transcription Factor Family AT1G62360 74.913 4.86e-130 375
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Rops2g04690 KNOX2 8.1e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g04690 - - gmx:100127401 535.798
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g04690 2 85224830 85230621 Rops11g01102 11 16075646 16081621 PCT