Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g04682 ATGAGTCAACTCGGTGTGATATTGCGGGAATCGTTGTCAACTGAAAGAGAAGCAAGAACCATTCTTGGTTTGTTAACGGAGCAAATGGACGGTGTGGATAGAGGGCAACGTAGGAGGCGTAGTCTCAAAGAACGGCTCAGATTCACTGGAATGGGATGTTGTGGGGCCACCTGGGTTTTCCGTCCAGTTAGACACGAACAGCATGAGGAGGAGCAACAACAAGTCCCGGGTCAAGATCCGGACCCGGTAGGACCCGAATGTGTGGGTCCGGGTCCGTCGGGTTCAGGGATGAATCTTGCGGCGGCGTTGGCGGCGGAGCGTCAATTACGGGGATCGCAGGAGGCGGAGGCGGGAGGAGAAACGGAGGCGGAGGCGGGAGGAGAAACGGAGACGCCGTCGAGGGTTTCGTTGATGAGGCTGTTGGAGGAAACGGAGGTGGAAACGGAGAAAGGTGGAGAGACGATGGGGAATGATTCGGTGTGCTGCGTGTGCATGGGGAGGAAGAAAGGCGCGGCTTTCATCCCATGTGGTCACACTTTTTGTAGGGCGTGTTCGAGGGAGCTGTGGTTGAATCGAGGGAGTTGTCCACTTTGCAATCGTTCAATTCTCGAGATTCTCGATATCTTCTGA 630 0.5524 MSQLGVILRESLSTEREARTILGLLTEQMDGVDRGQRRRRSLKERLRFTGMGCCGATWVFRPVRHEQHEEEQQQVPGQDPDPVGPECVGPGPSGSGMNLAAALAAERQLRGSQEAEAGGETEAEAGGETETPSRVSLMRLLEETEVETEKGGETMGNDSVCCVCMGRKKGAAFIPCGHTFCRACSRELWLNRGSCPLCNRSILEILDIF* 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g04682 209 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 139 209 IPR013083 -
Rops2g04682 209 Pfam Zinc finger, C3HC4 type (RING finger) 158 203 - -
Rops2g04682 209 ProSiteProfiles Zinc finger RING-type profile. 161 199 IPR001841 -
Rops2g04682 209 SUPERFAMILY RING/U-box 154 206 - -
Rops2g04682 209 CDD RING-HC 161 198 - -
Rops2g04682 209 PANTHER OS01G0917900 PROTEIN 5 209 - -
Rops2g04682 209 SMART ring_2 161 198 IPR001841 -
Rops2g04682 209 MobiDBLite consensus disorder prediction 66 133 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g04682 Rops-Chr2 85080893 85082072 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g04682 21 209 C3H Transcription Factor Family AT4G22250 54.762 1.32e-60 187
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g04682 - - gmx:106799504 237.269