Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g04680 ATGGGGAAATCAGGAGGTAGAAGAAAGAAGGGTGGTGGTGGTGGTAACGTTGATAATTCAGGTTCAGGTTCAGCTCCAACGGCAAATGGTGGCGTAGAGTTGGATTCATCAATATTTTTGAAGAAAGCCCATGAATTGAAAGAAGAAGGGAATAGGAGATTTCAGAATAAGGATTATGCTGGTGCTCTCGAACAGTATGAGAGTGCTCTTAGATTAACCCCAAAAACTCACCCTGACAGAGCTGTTTTTCATAGCAATAGAGCTGCATGTTTGATGCAAATGAAACCCATTGATTATGAAGCTGTGATTGCTGAGTGCACCATGGCCCTTCAGGTCCAGCCTAGATTTGTCAGGGCTCTTCTTAGGAGGGCTAGGGCATTTGAGGCTGTGGGCAAGTATGAAATGGCTGTGCAAGATGTTCAGTTCTTATTGGGAGCTGACCCTAATCACCAGGATGCTCTGGAGATTGCTCAGAGATTGAGGACTGCATTGGGACCTCGCCAGGAGGCTCAGCAGGACCTCCATAGTCGTCCCTCCCCTGCTGCCCTTGGTGCTTCCGCCATCCGTGGTGCACCTATTGCTGGATTGGGACCATGTTTGCCAGCCCGACCGGTACCGAAGAAAGTAGCAAATTCAGCAGTTGGGTCTGTTGTCTCACCTAATAATAAGCTAGACAAGTCCCAACCAGTTTTACCAACTGAGAATGGTCCTGAGACCAAGTCCCAGTTTTCAAAACTTGTGTTGAAGCCTTCAAATGGTTCTTCAAAATCACCCAACACAAAAACTGAAAACCAGAAGGAACAGTCATCTCTTTCATCAACTATTCATGGGCAGCGTTTGGAGGTCACAATTCGGTGGAGACCATTGAAGCTTATTTATGACCATGACATTAGGCTTGCCCAGATGCCTGTGAATTGCAGTTTCAGAGTGCTAAGAGATGTAGTAAGCAAAAGATTTCCATCATCAAATTCAGTTCTGATCAAGTACAAGGATAGTGATGGTGATTTGGTTACTATAACCTCTACCGATGAACTGAGATTGGCAGAGTCTACTGTTGATAGCCATCTCCTGAAAGAACCCGAAGCAGATAAAAGTGATTCTGTTTCGATGTTGAGACTACATATTGTTGAAGTTAGTCCAGATCAGGAGCCACCTATATTGGAAGAAGAGGAAGAGAAACCTGTTGAGAATGAAGGGATCAAGGGAGGTGAGAGTGGATCTCATTCCTCCCTTGGTGAATCTGTCTCTGAAGTTCCTGATTCTGAACTTGATAAGATAGTGAAGGATGCTCCAAAGGAAAAGCCAGGAGATACTGAATGCAAGGAAGTGGAGATGGATGATTGGTTGTTTGAGTTTGCTCAGCTTTTCCGCTCACATGTTGGTATTGATCCAGATGCTCATATTGACTTGCATGAGCTTGGGATGGAGCTTTGTTCAGAGGCACTTGAGGAAACAGTAACTAGTGAGGAGGCTCAGGATCTATTTGACAAGGCTGCTTCAAAGTTCCAGGAGGTGGCCGCTTTGGCATTCTTCAACTGGGGTAATGTTCATATGTGCGCTGCTAGGAAGCGGATCCCCCTAGATGAGTCAGCTGGAAAGGAGGTAGTGGCGGAACAGCTTCAAGTGGCTTATGATTGGGTCAAGGAAAAATATTCTTTGGCAAGAGAGAAGTATGAGGAAGCACTATTGATCAAACCAGACTTCTATGAGGGACTGTTGGCTCTGGGGCAGCAACAATTTGAAATGGCTAAACTTCATTGGTCTTTTGCACTTGCTAAGAAGATGGATCTGTCTGACTGGGATTCTACAGAGACCCTTCAACTGTTTGACAGTGCAGAGGAGAAGATGAAAGCTGCCACAGATATGTGGGAGAAGCTGGAGGAACAGAGAGCAAAAGAACTAAAGGACCCAAATGCAACCAAGAAAGAAGAACTATTGAGAAGAAGAAAGAAACAGGGAAGTGCTACTGAAGGTGAGTCCTCCAGTGTTGGTGGTCAGGGTGAGATATCTGCAGAAGAAGCTGCTGAGCAAGCAGCTGTCATGAGATCACAGATTCATCTCTTCTGGGGCAATATGCTTTTTGAAAGATCCCAAGTTGAATGCAAATTGGGAATGAGTGGTTGGAAGAAAAACCTGGAAGCTGCAACTGAACGCTTTAAGCTTGCAGGAGCCTCCGAGGCAGATATTTTGATGGTTCTAAAGAATCATTGCTCAAATGGAGATGCAAAAGAAGGAGATGATAAAAAGGCCCAGAACTCACAACCCAATAAGACTAATGAACTAGAGATCAATAAGGCTGATCAATAA 2307 0.4486 MGKSGGRRKKGGGGGNVDNSGSGSAPTANGGVELDSSIFLKKAHELKEEGNRRFQNKDYAGALEQYESALRLTPKTHPDRAVFHSNRAACLMQMKPIDYEAVIAECTMALQVQPRFVRALLRRARAFEAVGKYEMAVQDVQFLLGADPNHQDALEIAQRLRTALGPRQEAQQDLHSRPSPAALGASAIRGAPIAGLGPCLPARPVPKKVANSAVGSVVSPNNKLDKSQPVLPTENGPETKSQFSKLVLKPSNGSSKSPNTKTENQKEQSSLSSTIHGQRLEVTIRWRPLKLIYDHDIRLAQMPVNCSFRVLRDVVSKRFPSSNSVLIKYKDSDGDLVTITSTDELRLAESTVDSHLLKEPEADKSDSVSMLRLHIVEVSPDQEPPILEEEEEKPVENEGIKGGESGSHSSLGESVSEVPDSELDKIVKDAPKEKPGDTECKEVEMDDWLFEFAQLFRSHVGIDPDAHIDLHELGMELCSEALEETVTSEEAQDLFDKAASKFQEVAALAFFNWGNVHMCAARKRIPLDESAGKEVVAEQLQVAYDWVKEKYSLAREKYEEALLIKPDFYEGLLALGQQQFEMAKLHWSFALAKKMDLSDWDSTETLQLFDSAEEKMKAATDMWEKLEEQRAKELKDPNATKKEELLRRRKKQGSATEGESSSVGGQGEISAEEAAEQAAVMRSQIHLFWGNMLFERSQVECKLGMSGWKKNLEAATERFKLAGASEADILMVLKNHCSNGDAKEGDDKKAQNSQPNKTNELEINKADQ* 769
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g04680 768 Gene3D - 288 358 - -
Rops2g04680 768 MobiDBLite consensus disorder prediction 17 31 - -
Rops2g04680 768 Pfam PB1 domain 286 377 IPR000270 GO:0005515
Rops2g04680 768 MobiDBLite consensus disorder prediction 737 768 - -
Rops2g04680 768 MobiDBLite consensus disorder prediction 1 32 - -
Rops2g04680 768 MobiDBLite consensus disorder prediction 379 439 - -
Rops2g04680 768 Gene3D Tetratricopeptide repeat domain 39 164 IPR011990 GO:0005515
Rops2g04680 768 SUPERFAMILY CAD & PB1 domains 284 354 - -
Rops2g04680 768 SMART PB1_new 286 378 IPR000270 GO:0005515
Rops2g04680 768 SUPERFAMILY TPR-like 489 585 IPR011990 GO:0005515
Rops2g04680 768 Coils Coil 609 629 - -
Rops2g04680 768 ProSiteProfiles TPR repeat profile. 43 76 IPR019734 GO:0005515
Rops2g04680 768 ProSiteProfiles PB1 domain profile. 286 378 IPR000270 GO:0005515
Rops2g04680 768 PANTHER PROTEIN CLMP1 1 756 IPR044517 -
Rops2g04680 768 MobiDBLite consensus disorder prediction 739 753 - -
Rops2g04680 768 SUPERFAMILY TPR-like 40 174 IPR011990 GO:0005515
Rops2g04680 768 CDD PB1 289 348 - -
Rops2g04680 768 Gene3D Tetratricopeptide repeat domain 449 660 IPR011990 GO:0005515
Rops2g04680 768 MobiDBLite consensus disorder prediction 629 655 - -
Rops2g04680 768 MobiDBLite consensus disorder prediction 418 439 - -
Rops2g04680 768 MobiDBLite consensus disorder prediction 629 670 - -
Rops2g04680 768 SMART tpr_5 81 116 IPR019734 GO:0005515
Rops2g04680 768 SMART tpr_5 117 150 IPR019734 GO:0005515
Rops2g04680 768 SMART tpr_5 43 76 IPR019734 GO:0005515
Rops2g04680 768 MobiDBLite consensus disorder prediction 214 274 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g04680 Rops-Chr2 85049269 85052277 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g04680 40 164 Calmodulin-binding Proteins AT3G25230 27.941 4.07e-09 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g04680 K26538 - gmx:100786963 1252.65