Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g04661 ATGTCTCTGATCGAAGGCCCCGGAGTCCAACACCGTCACCCGTCGAAGCGAAAATTCGACGATGAAGAGGAAGATGTGTCGGACTTAGTGTGTGTCAGGATGAGGAAAGAGGAAGCCAAAGCGGTGAATTCATGGTCAGGTACAACAACAACGTTGGAGCGATCACACTTGCAATTCTTCGTTCGCATGATGTCTGGTGGGAACACGATTGTGATGCAAGCTTTTCCAGAAGACAGCGTGAAATCGATTCATGAGCGTATCCAAATCATGAAGGGAATCCCTTTATTCGAACAGAGACTGATTTATAGAGGGAAACAGCTTCAGTGGGAACAGACTCTCGCTGAGTGTTCCATCCAAAACGACGCTAATCTTCAACTTGTTGGTCGTATGCGTAGCACTGAACACCCGCAAGCCTGGCAGGTAATAAACGACATGGTTTCCATGGTTTATCGTCTCTGTCACGGTGAAACCACACATGATGCTTTGAAAGACATAAAGAGTCTCATCACTAGTTACCTCAACATGACACCCAGAATGGACAATGATTCTGCTTATGGTTATTTTCAGATTTTCTTGTCTTCTTCTGCCCCTTCTGTTCTTGTCATGCTTTATGTTTCCCCTTACCCAGGTAACAAGCACTGTGCTGATTCTTCTATTAGGCATTTCTTGACTTCTTGCCGAAATACCTTGTCCAAGACATTGCACACCCTTTGTGCGCGTGTGGTTTTGGAGTTTTGTAAATTGCTTAGGAGAGTGGGTTCTCATGACCCTTTGTATATCTTTTGTCGGAGTACTTTTGGGTCCTTGTTGGAAACTGCTGCTGTTTCATACTCTGCTTCTGAGACTGAAAATGTTAGTAAAGGAAAGATTTTGATTCATGATATCTTCCCCTTTGTTCGTGAGCTTGCTAATAGCTTGTTGACTGATTTGGATTTGAGTATGGAATCCCCTTCCACTTCTGATACCGCGCCTTTGTTGAATGATGTTGGGGATTTTGCTGCATTCTTGATACCTTTGAGGACAGGAATCAAGGAGCAACAAGCTCATCGGAATATTGTGACTCGGCAGAAGCCCCATGAGGATGTCTTGCTAGCTGAAGAGATTGAATACCTTCATCTTTTGTACAATGAGTTATTGAACAAGATTGATCAGTGTCTTCAAAAAATGGAGCAAAAATTGGCTGACAAGGAAATGATGCAAGGGGATGATAGTCTTTGTCCTGCTTGGTCTCAGTATCTTTCCATTCTGAAGGAATTGTATCAAATTTCTAAGCTTTATGATGGTGCTGAAGAAAAGCTTTGGAGTGTTTTGACGTGTCAAAGAAGTGTGTTGTGTCTATTGATTGTTCGATATGCAAAGAGGACTGATGAGCATCAGTGGATTCTTGAGCACAGGTGTGTGACGAATTTTGAGTCTAGGAGGCATTTGGCAATGATGATGTTCCCAGAGGTGAAAGAAGACTATGAGGAGTTGCACGAGATGCTTATTGACAGGTCTCAGTTATTGACTGAATCTTTTGAATACATAGCAAGAGCTGAGCCTGAATCACTGCATGCTGGCTTATTTATGGAATTCAAAAATGAGGAAGCCACTGGCCCGGGGGTACTGAGGGAGTGGTTTCTTTTGGTATGTCAAGCAATATTCGATCCACAAAATGCTCTTTTTGTGGCATGCCCAAATGATCAAAGGAGATTTTTTCCTAATCCTGCTTCTAAGGTACATCCTCTGCACCTTGAGTACTTCAGCTTCTCTGGTCGAGTTATTGCATTAGCTTTGATGCATAGGGTGCAAGTGGGTATTGTTTTTGATCGTGTGTTTTTCTTGCAATTGGCTGGAAAGAATATCACTTTAGAAGATATAAAGGATGCAGATCCTTACCTGTATACTAGCTGCAAGCAAATATTGGAGATGGATTCTGATTTCATTGATTCAGATGCATTAGGACTGACATTTGTTAGAGAAGTGGAGGAATTAGGACACAGGAAAGTGGTTGAGCTCTTGCCTGGTGGGAAAAACACTGTAGTTAATAGTGAGAACAGGGAGAAGTATGTTGATCTTCTTATACAGGATCGTTTTGTAACATCCATATATGAGCAGGTGTCACATTTTGCCAAAGGTTTTGCTGATATTCTCTCAAACTCAAAGCTCCAGCAGTTTTTCTTTCAAAGTTTAGAGCTTGAAGATCTTGATTGGATGCTGCATGGGAGTGAAGATACCATTTCTGTTGAAGATTGGAAAGCACACACGGAGTATAATGGCTATAAAGAGACAGATGTTCAGATATCTTGGTTTTGGGAGATTGTGGGGAGCATGACAGCGGAGCAAAGAAAGGTTCTTCTATTCTTTTGGACATCTGTGAAATACTTACCGGTTGAAGGTTTCCGTGGTTTGGCTTCACGTCTCTCAATTTACAAATCCCTTGAACCTGGTGATCGCCTCCCTTCATCTCACACATGCTTTTACCGGCTGTGTTTTCCAGTTTATTCATCCAAGTCTGTCATGCAAGATCGTCTCAAAGTCATCACTAAAGAACACATTGGTTGCAGTTTTGGTACTTGGTGA 2562 0.4223 MSLIEGPGVQHRHPSKRKFDDEEEDVSDLVCVRMRKEEAKAVNSWSGTTTTLERSHLQFFVRMMSGGNTIVMQAFPEDSVKSIHERIQIMKGIPLFEQRLIYRGKQLQWEQTLAECSIQNDANLQLVGRMRSTEHPQAWQVINDMVSMVYRLCHGETTHDALKDIKSLITSYLNMTPRMDNDSAYGYFQIFLSSSAPSVLVMLYVSPYPGNKHCADSSIRHFLTSCRNTLSKTLHTLCARVVLEFCKLLRRVGSHDPLYIFCRSTFGSLLETAAVSYSASETENVSKGKILIHDIFPFVRELANSLLTDLDLSMESPSTSDTAPLLNDVGDFAAFLIPLRTGIKEQQAHRNIVTRQKPHEDVLLAEEIEYLHLLYNELLNKIDQCLQKMEQKLADKEMMQGDDSLCPAWSQYLSILKELYQISKLYDGAEEKLWSVLTCQRSVLCLLIVRYAKRTDEHQWILEHRCVTNFESRRHLAMMMFPEVKEDYEELHEMLIDRSQLLTESFEYIARAEPESLHAGLFMEFKNEEATGPGVLREWFLLVCQAIFDPQNALFVACPNDQRRFFPNPASKVHPLHLEYFSFSGRVIALALMHRVQVGIVFDRVFFLQLAGKNITLEDIKDADPYLYTSCKQILEMDSDFIDSDALGLTFVREVEELGHRKVVELLPGGKNTVVNSENREKYVDLLIQDRFVTSIYEQVSHFAKGFADILSNSKLQQFFFQSLELEDLDWMLHGSEDTISVEDWKAHTEYNGYKETDVQISWFWEIVGSMTAEQRKVLLFFWTSVKYLPVEGFRGLASRLSIYKSLEPGDRLPSSHTCFYRLCFPVYSSKSVMQDRLKVITKEHIGCSFGTW* 854
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g04661 853 FunFam E3 ubiquitin-protein ligase UPL5 isoform A 50 145 - -
Rops2g04661 853 SUPERFAMILY Hect, E3 ligase catalytic domain 488 839 IPR035983 GO:0004842
Rops2g04661 853 Pfam Ubiquitin family 60 131 IPR000626 GO:0005515
Rops2g04661 853 SUPERFAMILY Ubiquitin-like 58 145 IPR029071 -
Rops2g04661 853 PRINTS Ubiquitin signature 68 88 IPR019956 -
Rops2g04661 853 PRINTS Ubiquitin signature 110 131 IPR019956 -
Rops2g04661 853 PRINTS Ubiquitin signature 89 109 IPR019956 -
Rops2g04661 853 Coils Coil 375 395 - -
Rops2g04661 853 PANTHER HECT DOMAIN UBIQUITIN-PROTEIN LIGASE 58 851 - -
Rops2g04661 853 Gene3D Hect, E3 ligase catalytic domain 736 852 - -
Rops2g04661 853 FunFam E3 ubiquitin-protein ligase UPL5 isoform A 613 695 - -
Rops2g04661 853 CDD HECTc 492 851 IPR000569 GO:0004842
Rops2g04661 853 ProSiteProfiles HECT domain profile. 513 853 IPR000569 GO:0004842
Rops2g04661 853 SMART hect_3 511 851 IPR000569 GO:0004842
Rops2g04661 853 MobiDBLite consensus disorder prediction 1 21 - -
Rops2g04661 853 Gene3D Hect, E3 ligase catalytic domain 613 695 - -
Rops2g04661 853 Gene3D - 50 148 - -
Rops2g04661 853 SMART ubq_7 57 129 IPR000626 GO:0005515
Rops2g04661 853 Pfam HECT-domain (ubiquitin-transferase) 542 845 IPR000569 GO:0004842
Rops2g04661 853 Gene3D Hect, E3 ligase catalytic domains 495 726 - -
Rops2g04661 853 ProSiteProfiles Ubiquitin domain profile. 57 133 IPR000626 GO:0005515
Rops2g04661 853 FunFam E3 ubiquitin-protein ligase UPL5 737 852 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g04661 Rops-Chr2 84836207 84845294 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g04661 57 131 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 40.000 1.49e-11 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g04661 - - gmx:100796470 1451.8