Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g04651 ATGGTTTCTGCGGAGAACAATTCTGAGCCCGATTCCAGTGGTTCAACCCTAACCTATCAGTGTGACACCTCCACCATTTCAAACAAAAATCAGAGACAAATGCCGAGGTCCATGCGAACCATACGTTCCAATCTATTCCTAGAAGAACATGCCTGCTCAGAAAGATCCACATGCGTTTCCGACAACTTAACCAATTCCCTCATAGACCTGGCGTCGCGAAACAACAAATCCGTTAAAGTGGACGAACAACTTCTAGAGCTTTCTCAAACTTTCACCGATTTCTCTGCTTGTAGCAGTGATATCTCCGGAGAACTCCAGAGACTCGCCACCGAACCCCGCCTTCAAAATGTCACCGAGATTATTGAGACTATTTCGCCGGAGGATCTTCAGCCGACGGTGAAGATCTGCATCGAAGGCCTTCAATCGCCGTCGGTCGCCGTGAAACGATCGGCGGCAGCGAATCTGAGGTTGTTGGCGAAGAATCGAGCGGAAAACCGTGCTCTGATCGGCGAGTCCGGTGCGTTTCCTGCTTTGGTTCCGTTACTCCGGTGCAGTGATCCATGGACGCAGGAACACGCCGTTACTGCGTTGCTGAATCTATCTCTTCTTGAAGACAACAAGTCACTGATAACCAACGCCGGTGCGGTTAAGTTACTTGTTTATGTGCTTAAAACAGGGACGGAAACTTCAAAACAGAACGCGGCATGTGCGCTTTTGAGCCTTGCAATGGTGGAAGAAAACAAGAGCTCAATCGGTGCTTGTGGGGCAATACCACCGCTTGTTTCGTTGTTGTTGAGTGGTTCCACCAGGGGGAAGAAGGATGCACTCACCACACTCTATAAGCTCTGTTCGGTGAAGCAGAACAAGGAGAGGGTGGTGTGTGCCGGAGCGGTGAAGCCTCTGGTGGAGCTGGTGGCGGAGCAAGGGGCCGGTATGGTGGATAAGGCATTGGTGGTGCTGAATAGCTTGGCGGGGATTCAGGAAGGAAGATATGAAATTGTGGAACAAGGTGGAATAGGTGTTCTTGTGGAATCAATTGAAGATGGGTCGATGAAGGGAAAAGAATTTGCTGTTTTGACACTAGTGCAGTTATGTGCTGATAGTGTTAGGAACAGAGGGTTGCTTGTGAGGGAGGGTGGGATTCCTCCTCTGGTTGCACTTTCACAGATTGGAACTGTTCGAGCTAAGCATAAGGCTGTGACACTCCTTGAATATTTGAGAGAATCAAGACAAGAAGCGTCCTCGTCAAGTCCTTAG 1257 0.4948 MVSAENNSEPDSSGSTLTYQCDTSTISNKNQRQMPRSMRTIRSNLFLEEHACSERSTCVSDNLTNSLIDLASRNNKSVKVDEQLLELSQTFTDFSACSSDISGELQRLATEPRLQNVTEIIETISPEDLQPTVKICIEGLQSPSVAVKRSAAANLRLLAKNRAENRALIGESGAFPALVPLLRCSDPWTQEHAVTALLNLSLLEDNKSLITNAGAVKLLVYVLKTGTETSKQNAACALLSLAMVEENKSSIGACGAIPPLVSLLLSGSTRGKKDALTTLYKLCSVKQNKERVVCAGAVKPLVELVAEQGAGMVDKALVVLNSLAGIQEGRYEIVEQGGIGVLVESIEDGSMKGKEFAVLTLVQLCADSVRNRGLLVREGGIPPLVALSQIGTVRAKHKAVTLLEYLRESRQEASSSSP* 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g04651 418 FunFam U-box domain-containing protein 4 272 413 - -
Rops2g04651 418 FunFam U-box domain-containing protein 4 119 271 - -
Rops2g04651 418 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 255 297 IPR000225 GO:0005515
Rops2g04651 418 PANTHER U BOX DOMAIN-CONTAINING 65 407 - -
Rops2g04651 418 Gene3D - 37 225 IPR011989 -
Rops2g04651 418 Pfam Armadillo/beta-catenin-like repeat 164 201 IPR000225 GO:0005515
Rops2g04651 418 Pfam Armadillo/beta-catenin-like repeat 246 284 IPR000225 GO:0005515
Rops2g04651 418 Gene3D - 226 417 IPR011989 -
Rops2g04651 418 SUPERFAMILY ARM repeat 128 407 IPR016024 -
Rops2g04651 418 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 173 215 IPR000225 GO:0005515
Rops2g04651 418 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 296 338 IPR000225 GO:0005515
Rops2g04651 418 MobiDBLite consensus disorder prediction 1 35 - -
Rops2g04651 418 SMART arm_5 244 284 IPR000225 GO:0005515
Rops2g04651 418 SMART arm_5 368 408 IPR000225 GO:0005515
Rops2g04651 418 SMART arm_5 162 202 IPR000225 GO:0005515
Rops2g04651 418 SMART arm_5 326 366 IPR000225 GO:0005515
Rops2g04651 418 SMART arm_5 203 243 IPR000225 GO:0005515
Rops2g04651 418 SMART arm_5 285 325 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g04651 Rops-Chr2 84717670 84720340 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g04651 128 411 U-box Gene Family AT2G23140 50.000 9.53e-81 259
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g04651 - - gmx:100818658 580.482