Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g04650 ATGTTAAAGCCAAGATTCAAGACAAGGAAGGGATCCCACCTAACCAGCAAAGGCTCATATTTGCTTGTAAGCAATTGGAGGATGGTCGCACTCTTGCAGATTACAACATTCAAAAAAGAGTCCAACCTTCACCTTGTGCTTCACCTCAGTGGTGGCATGCAAATTTTCGTTAAGACCTTGACTGGGAAAACCATCACCTTGGAGGCTGAATCCTCGGATACCATTGACAATGTTAAGGCCAAGATCCAGGACAAGGAGGGTATCCCATCAGATCAGCAGAGGCTGATTTTTTACGGCCACACTGTTACCTCATGTGGCACCTTGGATGATTACTGTTGGCGTAGGAACCATAAACAGGGATCGACGTTGTCGACGTCTAACTGA 384 0.4609 MLKPRFKTRKGSHLTSKGSYLLVSNWRMVALLQITTFKKESNLHLVLHLSGGMQIFVKTLTGKTITLEAESSDTIDNVKAKIQDKEGIPSDQQRLIFYGHTVTSCGTLDDYCWRRNHKQGSTLSTSN* 128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g04650 127 SMART ubq_7 53 121 IPR000626 GO:0005515
Rops2g04650 127 Pfam Ubiquitin family 55 111 IPR000626 GO:0005515
Rops2g04650 127 ProSiteProfiles Ubiquitin domain profile. 53 111 IPR000626 GO:0005515
Rops2g04650 127 Gene3D - 51 102 - -
Rops2g04650 127 SUPERFAMILY Ubiquitin-like 32 117 IPR029071 -
Rops2g04650 127 FunFam Polyubiquitin-C 53 125 - -
Rops2g04650 127 PANTHER UBIQUITIN 53 123 - -
Rops2g04650 127 PRINTS Ubiquitin signature 84 104 IPR019956 -
Rops2g04650 127 PRINTS Ubiquitin signature 63 83 IPR019956 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g04650 Rops-Chr2 84714285 84715128 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g04650 53 123 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 73.239 9.12e-28 97.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g04650 - K08770 sly:101258282 115.546