Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g04641 ATGGGTGGTGATGAAGCACAACAGTCATTGCTTTCAAAGTCAAGAGATCATTCTCATCTCAATGAGAAGAGTGACCTCCAGAGAAGAAAACCAAGGCGTGGCAGTGCTTCAAAGATAGATATCAATTTCCAAGAACAAAATGTTGTTCAAGACCCTTTACATACTCAATGCATAGCTGCAAAACCAAAAGCAGAATTCCAATTTAAGCCAATGTTCTTGTGGTTAGCTGCCTACCTAGGTTGTGGCACCCTATGTTTCTTTCTCACAAGATATCAGATCAAGGGTATCAAAACCAATGGGTTTCTTGATGCCATTTACTTCTGTGTTGTGACAATGACTACTGTTGGATATGGAGATCTTGTGCCCAATAGCCCATTGGCAAAACTTCTTGCCTGCATTTATGTCTTCACTGGTATGGCTCTTGTTGGGTTAATTCTTAGCAAGGCAGCAGATTACATCCTTGAAAAGCAGGAAATTTTACTAGTTAGAGCCATGTACAAGGATGAAAAAGTTGGTCCAGAAGAGCTTTTTGAAACTAACAAAGCCAAATACAAATTTGTTCTGGCAACATCCACTTTTGTTGTGCTTATGATTGTTGGAACTATTTTTCTGTATTTTATTGAAAATCTAGATTTTGTGGATGCCCTCTATTGTGTTTGTTCTACAGTCACCACTTTAGGCTATGGGGATGAGAGCTTCTCAACTAGTGTTGGTCGTACTTTTGCTGTGTTCTGGATATTGAGCAGCACCATTTGTTTAGCTCAGTCTTTTGCCTATCTTGCTGAACTATATACTGAAGATAGACAAAGATCACTGGCAAAAATGGTTCTTACACGAAAATTGTCACACCTTGATCTTGAGGAAGCAGATCTTGATGGAGACAAAGTTGTCAGTGCTGCAGAGTTCGTTGTATACAAGTTGAAGGAAATGGAAAAGATCAGCCAAGAAGAAATTTCAGTTGTGATGGAGATTTTTAGAAAACTAGATTGTGATAAATCAGGAACTTTGACAGAAGCTGATATAAGATATTCTGAATCATCTTAA 1044 0.3841 MGGDEAQQSLLSKSRDHSHLNEKSDLQRRKPRRGSASKIDINFQEQNVVQDPLHTQCIAAKPKAEFQFKPMFLWLAAYLGCGTLCFFLTRYQIKGIKTNGFLDAIYFCVVTMTTVGYGDLVPNSPLAKLLACIYVFTGMALVGLILSKAADYILEKQEILLVRAMYKDEKVGPEELFETNKAKYKFVLATSTFVVLMIVGTIFLYFIENLDFVDALYCVCSTVTTLGYGDESFSTSVGRTFAVFWILSSTICLAQSFAYLAELYTEDRQRSLAKMVLTRKLSHLDLEEADLDGDKVVSAAEFVVYKLKEMEKISQEEISVVMEIFRKLDCDKSGTLTEADIRYSESS* 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g04641 347 Pfam Ion channel 193 264 IPR013099 -
Rops2g04641 347 Pfam Ion channel 81 153 IPR013099 -
Rops2g04641 347 SUPERFAMILY EF-hand 285 343 IPR011992 -
Rops2g04641 347 PANTHER POTASSIUM CHANNEL, SUBFAMILY K 99 319 IPR003280 GO:0005267|GO:0016020|GO:0071805
Rops2g04641 347 SUPERFAMILY Voltage-gated potassium channels 67 155 - -
Rops2g04641 347 ProSitePatterns EF-hand calcium-binding domain. 290 302 IPR018247 -
Rops2g04641 347 Gene3D - 53 172 - -
Rops2g04641 347 SUPERFAMILY Voltage-gated potassium channels 177 280 - -
Rops2g04641 347 Gene3D - 173 271 - -
Rops2g04641 347 PRINTS Two pore domain K+ channel signature 110 138 IPR003280 GO:0005267|GO:0016020|GO:0071805
Rops2g04641 347 PRINTS Two pore domain K+ channel signature 224 233 IPR003280 GO:0005267|GO:0016020|GO:0071805
Rops2g04641 347 MobiDBLite consensus disorder prediction 10 35 - -
Rops2g04641 347 ProSitePatterns EF-hand calcium-binding domain. 329 341 IPR018247 -
Rops2g04641 347 Gene3D - 286 343 - -
Rops2g04641 347 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g04641 Rops-Chr2 84513817 84515048 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g04641 50 347 Ion Channels AT5G55630 55.814 4.74e-116 338
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g04641 K05389 - gmx:100799492 544.658