Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g04621 ATGGGGAATGTGAATGGAAATCCTTTGGAAGAAGAAGAAGTTTCTGCAACTGTGCCCCAAGATAGGGATAGGGATGAAGATGGGGTTGGGAACACCATGGCTCATTCTCCCCCTACCAGCCCTGGAGCTACCCATTCTCCATTCATCTTCACTCCTCAAGTACCGGTGGTTCCACTACAAAGACCAGATGAGATGCATGCTCTGAGTCATTCCTGGATGCAAACTACTTCAGGGTATGAAGATATGTACTGTGAACACGGAATTCCTACAGTGATTACTTGGAGTTATGATGGAAAAGAAGTAGCTGTGGAGGGGTCATGGGATAATTGGAAAACAAGAGTGCGCTTGCAGAGATCAGGGAAAGACTTTGCAATAATGAAGGTACTGCCGTCTGCTGTTTACCAGTACCGATTTATTGTTGATGGACGTTGGAGGTATGCCCCAGACTTGCCTTGGGCCCAAGATGATGCCGGGAATACTTGCAACATCTTGGACTTACAGGATTATGTTCCTGAAGACATTGGAAGCATTTCAAGTTTTGAACCTCCTCAGTCACCAGAGTCGAGTTATAACAACTTACAACTTAGTTCTGAAGATTATGCAAAGGAGCCACCATTAGTTCCTCCACACCTGCAAATGACACTGCTAAATGTGCGTACAACAGATATGGAGGTCCAACCTCCTATGCCAAGACCTCAACATGGAGTGCTCAATCATCTTTACATGCAGAAAGGAAAGATCAGTCCTTCAGTGGTTGCCCTTGGTACAACTCATCGGTTTCAAGCCAAATATGTCACCGTGGTGCTTTACAAGTCTTTGCAGAGGTAA 828 0.4541 MGNVNGNPLEEEEVSATVPQDRDRDEDGVGNTMAHSPPTSPGATHSPFIFTPQVPVVPLQRPDEMHALSHSWMQTTSGYEDMYCEHGIPTVITWSYDGKEVAVEGSWDNWKTRVRLQRSGKDFAIMKVLPSAVYQYRFIVDGRWRYAPDLPWAQDDAGNTCNILDLQDYVPEDIGSISSFEPPQSPESSYNNLQLSSEDYAKEPPLVPPHLQMTLLNVRTTDMEVQPPMPRPQHGVLNHLYMQKGKISPSVVALGTTHRFQAKYVTVVLYKSLQR* 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g04621 275 SUPERFAMILY E set domains 87 173 IPR014756 -
Rops2g04621 275 Pfam Glycogen recognition site of AMP-activated protein kinase 88 167 IPR032640 -
Rops2g04621 275 SMART AMPKBI_2 183 273 IPR006828 GO:0005515
Rops2g04621 275 SUPERFAMILY AMPKBI-like 170 272 IPR037256 -
Rops2g04621 275 Coils Coil 273 275 - -
Rops2g04621 275 CDD E_set_AMPKbeta_like_N 89 165 - -
Rops2g04621 275 Pfam 5'-AMP-activated protein kinase beta subunit, interaction domain 201 271 IPR006828 GO:0005515
Rops2g04621 275 Gene3D - 176 273 - -
Rops2g04621 275 MobiDBLite consensus disorder prediction 15 30 - -
Rops2g04621 275 MobiDBLite consensus disorder prediction 1 45 - -
Rops2g04621 275 Gene3D Immunoglobulins 83 170 IPR013783 -
Rops2g04621 275 PANTHER SNF1-RELATED PROTEIN KINASE REGULATORY SUBUNIT BETA-1 1 275 IPR043554 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g04621 Rops-Chr2 84232475 84235855 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g04621 87 168 Protein tyrosine phosphatase (PTP) family AT3G01510 32.955 1.41e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g04621 K07199 - gmx:100777497 441.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g04621 2 84232475 84235855 Rops11g01165 11 17064543 17068327 PCT