Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g04619 ATGGCTGAATCTGATAACGAGTCAGGAAAGAATGAATCGTCAGGGTTCAGAGAGCAGGACAGGTTGCTTCCAATAGCAAACGTGAGTAGGATCATGAAAAAAGGGTTACCAAGCAACGCTAAGATCTCAAAGGAATCAAAAGAGAGCATGCAAGAGTGTGTATCAGAGTTCATAAGCTTCATAACTGGGGAGGCATCTGAGAAGTGCCACAAAGAGAAGAGGAAGACAATCAACGGTGATGATCTTTTATGGGCCATGACCTCACTGGGTTTTGAAGAGTATGTGGAGCCCCTCAAGGCTTACCTTCACAAGTATAGGGAGATGGAAGGGGAGAAGACTGGTATGATTGGGAGTAGGCAACAGGGTGGTGATGCTGCTGCTGGGGTGCCATCATCATCATCACCCACTATGATGATGATCATGGATCACCACCATCAAGGCCTTATGTATAATGTCTGGAAGAACTAG 468 0.4594 MAESDNESGKNESSGFREQDRLLPIANVSRIMKKGLPSNAKISKESKESMQECVSEFISFITGEASEKCHKEKRKTINGDDLLWAMTSLGFEEYVEPLKAYLHKYREMEGEKTGMIGSRQQGGDAAAGVPSSSSPTMMMIMDHHHQGLMYNVWKN* 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g04619 155 MobiDBLite consensus disorder prediction 1 21 - -
Rops2g04619 155 SUPERFAMILY Histone-fold 19 122 IPR009072 GO:0046982
Rops2g04619 155 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 22 86 IPR003958 -
Rops2g04619 155 MobiDBLite consensus disorder prediction 1 17 - -
Rops2g04619 155 Gene3D Histone, subunit A 9 132 IPR009072 GO:0046982
Rops2g04619 155 FunFam Nuclear transcription factor Y subunit B-3 11 134 - -
Rops2g04619 155 ProSitePatterns NF-YB/HAP3 subunit signature. 53 69 IPR003956 GO:0005634|GO:0006355|GO:0043565
Rops2g04619 155 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 5 120 IPR027113 GO:0001228|GO:0006355|GO:0016602
Rops2g04619 155 PRINTS CCAAT-binding transcription factor subunit A signature 69 87 - -
Rops2g04619 155 PRINTS CCAAT-binding transcription factor subunit A signature 88 106 - -
Rops2g04619 155 PRINTS CCAAT-binding transcription factor subunit A signature 50 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g04619 Rops-Chr2 84197412 84198425 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g04619 1 117 CCAAT-HAP3 Transcription Factor Family AT4G14540 75.833 2.43e-64 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Rops2g04619 CBFD_NFYB_HMF 1.2e-26 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g04619 K08065 - gmx:100305641 210.305