Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g04618 ATGAGGCAGCAGATAACAGAGAACAACCACTCAGCAGCAACAACAGAAGACAATGAATGCACTGTGAGGGAACAAGACCGTTTCATGCCAATTGCAAATGTGATAAGGATCATGCGGAAGATCCTACCCCCACATGCCAAAATCTCTGATGATGCAAAAGAAACAATCCAAGAGTGTGTATCTGAATATATCAGCTTCATAACTGGTGAGGCCAATGAACGTTGCCAAAGGGAACAACGCAAGACCATCACTGCAGAGGATGTGCTTTGGGCTATGAGTAAGCTTGGATTTGATGACTACATTGAACCTCTCACTGTGTACCTTCACCGTTACCGTGAGCTTGAAGGTGACCGTACCTCCATGAGGGCTGAACCACTTGGGAAAAGGACTGTGGAGTATGGAACACTTGGTCTTGCTACTGCTTTTGTTCCACCATTTCATATTGGTCATCCAAATGGGTATTATGGTGCACCAATGGGGACTTATATGAGGGATGCATCTAATGCAGCAGGGTCATCTCAAGCTGCACTCACTAATGCTGAACAAAATGCTCAATATAAATGA 564 0.4468 MRQQITENNHSAATTEDNECTVREQDRFMPIANVIRIMRKILPPHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTITAEDVLWAMSKLGFDDYIEPLTVYLHRYRELEGDRTSMRAEPLGKRTVEYGTLGLATAFVPPFHIGHPNGYYGAPMGTYMRDASNAAGSSQAALTNAEQNAQYK* 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g04618 187 Gene3D Histone, subunit A 15 134 IPR009072 GO:0046982
Rops2g04618 187 MobiDBLite consensus disorder prediction 1 21 - -
Rops2g04618 187 PRINTS CCAAT-binding transcription factor subunit A signature 94 112 - -
Rops2g04618 187 PRINTS CCAAT-binding transcription factor subunit A signature 56 74 - -
Rops2g04618 187 PRINTS CCAAT-binding transcription factor subunit A signature 75 93 - -
Rops2g04618 187 MobiDBLite consensus disorder prediction 1 16 - -
Rops2g04618 187 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 28 92 IPR003958 -
Rops2g04618 187 FunFam Nuclear transcription factor Y subunit B-6 17 133 - -
Rops2g04618 187 ProSitePatterns NF-YB/HAP3 subunit signature. 59 75 IPR003956 GO:0005634|GO:0006355|GO:0043565
Rops2g04618 187 SUPERFAMILY Histone-fold 25 123 IPR009072 GO:0046982
Rops2g04618 187 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 7 168 IPR027113 GO:0001228|GO:0006355|GO:0016602
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g04618 Rops-Chr2 84162124 84162687 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g04618 17 154 CCAAT-HAP3 Transcription Factor Family AT5G47670 70.861 1.74e-69 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Rops2g04618 CBFD_NFYB_HMF 4.5e-26 CL0012