Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g04592 ATGGATCCTGTCAGTGAGGGGAGCACTCTCAGTAACAACCCTAATCTTGCTTCCAAGCAGCGTTTACGCTGGACTAATGAGTTACATGAACGCTTTATTGATGCTGTGGCACAACTTGGTGGTCCAGATCGTGCCACACCTAAAGGTGTCCTCAGAGTTATGGGAGCACAAGGCTTAACAATATACCATGTCAAAAGCCATTTACAGAAATATAGATTAGCAAAATACCTACCTGACTCGTCATCAGATGGGAAAAATGCCTACAAGAAAGACACAGGGGATATGCATTCCAATTTAGATGGTTCATCTGGGATGCAAATTTCTGAAGCGCTAAAGCTTCAAATGGAGGTGCAGAAGCGACTGCATGAGCAATTAGAGGTGCAGAGACAGCTAAAATTGCGGATAGAAGCCCAGGGTAAATACTTGAAGAAGATTATTGAAGAGCAACAGAGATTAAGTGGGGTTCTTTCAGAAACACCTGACTCTGGAGTTGCAGCTCCATTTCCAGGACCTGTGTGCCAAGAACCTGATAATAAGACTGATCCAGCAACCCCTGCCCCAACCTCTGAATGCCCCCTTCTGGAAAAAGCTGCCAAAGAGCGTGCCCTAGCTAAGAGTCTTTCAATAGATGAATCTTTTTCATCTCACCATGAACCATTGACACCGGATTCTTGTTGCCATGTTGGTTCCCCCACTGACAGCCCAAAAGGGGAGAGGTTAACAAAGAAGCAACCGGTGAGCACAGAGGGATCATATTCTAAACCAGAAATGGTGCTTCCACGTCATATAATTGAGTCAAGAATGTCATATCAGTAA 816 0.4473 MDPVSEGSTLSNNPNLASKQRLRWTNELHERFIDAVAQLGGPDRATPKGVLRVMGAQGLTIYHVKSHLQKYRLAKYLPDSSSDGKNAYKKDTGDMHSNLDGSSGMQISEALKLQMEVQKRLHEQLEVQRQLKLRIEAQGKYLKKIIEEQQRLSGVLSETPDSGVAAPFPGPVCQEPDNKTDPATPAPTSECPLLEKAAKERALAKSLSIDESFSSHHEPLTPDSCCHVGSPTDSPKGERLTKKQPVSTEGSYSKPEMVLPRHIIESRMSYQ* 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g04592 271 NCBIfam myb-like DNA-binding domain, SHAQKYF class 19 74 IPR006447 GO:0003677
Rops2g04592 271 FunFam Myb family transcription factor 18 76 - -
Rops2g04592 271 Pfam Myb-like DNA-binding domain 22 72 IPR001005 -
Rops2g04592 271 Pfam MYB-CC type transfactor, LHEQLE motif 105 151 IPR025756 -
Rops2g04592 271 Coils Coil 108 128 - -
Rops2g04592 271 MobiDBLite consensus disorder prediction 213 271 - -
Rops2g04592 271 Gene3D - 18 77 - -
Rops2g04592 271 MobiDBLite consensus disorder prediction 169 190 - -
Rops2g04592 271 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 16 76 IPR017930 -
Rops2g04592 271 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 18 264 IPR044848 GO:0003700
Rops2g04592 271 SUPERFAMILY Homeodomain-like 18 73 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g04592 Rops-Chr2 83783056 83788007 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g04592 54 269 G2-like Transcription Factor Family AT2G01060 65.278 2.56e-88 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Rops2g04592 Myb_DNA-binding 1.2e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g04592 - - tcc:18597377 429.483