Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g04577 ATGGCAATTGCAGCGGCAACAACTTCATCACCCACCATGAGCCTCAGCCATAGCCATAGCCATGATGATACCACTTCAACCAACAACGACAACAATTCCAAGCTAGATGATCATGAAAACGACACCGTTATGCCCGGGTTTCGTTTCCACCCAACTGAAGAAGAGCTTGTAGAGTTCTACCTTCGCCGTAAGGTGGAGGGAAAGCGTTTCAATGTTGAGCTTATCACTTTCCTTGATCTTTATCGCTATGACCCTTGGGAGCTTCCTGCTTTGGCAGCAATTGGAGAGAAGGAATGGTATTTCTATGTGCCTAGAGATAGAAAGTATCGAAACGGTGATCGTCCAAATCGTGTTACCACATCTGGGTATTGGAAGGCAACAGGAGCTGATAGGATGATCAGAACCGAAGACTTTCGGTCAATTGGGCTCAAGAAAACCCTAGTTTTCTATTCTGGGAAAGCTCCAAAAGGCATCCGAACCAGTTGGATTATGAATGAGTATCGCTTGCCACAACATGAAACTGAACGACATCAAAAGGGTGAGATATCACTTTGCCGGGTATACAAAAGAGCTGGAGTAGAAGACCATCCTTCCCTCCCTCGTTGTCTCCCAACCCGGCCATCCTCTTCATCAAGAGCTTCACATTCAGACAAGAAGCACAATGAAATGGTTCACCACAACATGATGGGATTTGTGGGACAATCAAAGCCAATTGATCAAATAAGTAATAAAATCAATGAAACTGATGGAAACAATACTACTGGTTCGGATGTAAATACAGCTCTTGGGCTTTCCAAATACAATGCTTACCGTCCAATTAGTACAACAATGGGACTACCAATTTCAATTGAAGAGGAAGGGTTGATGATCATGCAGCAACCTAAGCAAGCACATGCACCACCTAACTCTTTAGTCCCTTCCTTATTCCCTGCTGGCCCTTCTTCCGCATCTTCCAACAATGCAATCGTGGATGATCTTAACAGGCTAGTGAGTTATCAACAGCAGTACTACAATGTTCAGAGCAATCCCAATCAATTTTCTACCTTGCTGATGCAACAAGCACCGATGTCTCTCAACGCTTCGCTACCAAATCCACTTCCAACCACCTTCTCTGACCGACTGTGGGACTGGAATCCAATCCCCGAGGTAAACCAAGAGCACAGCAACATGTCCTTCAAGTAA 1182 0.4484 MAIAAATTSSPTMSLSHSHSHDDTTSTNNDNNSKLDDHENDTVMPGFRFHPTEEELVEFYLRRKVEGKRFNVELITFLDLYRYDPWELPALAAIGEKEWYFYVPRDRKYRNGDRPNRVTTSGYWKATGADRMIRTEDFRSIGLKKTLVFYSGKAPKGIRTSWIMNEYRLPQHETERHQKGEISLCRVYKRAGVEDHPSLPRCLPTRPSSSSRASHSDKKHNEMVHHNMMGFVGQSKPIDQISNKINETDGNNTTGSDVNTALGLSKYNAYRPISTTMGLPISIEEEGLMIMQQPKQAHAPPNSLVPSLFPAGPSSASSNNAIVDDLNRLVSYQQQYYNVQSNPNQFSTLLMQQAPMSLNASLPNPLPTTFSDRLWDWNPIPEVNQEHSNMSFK* 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g04577 393 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 41 291 - -
Rops2g04577 393 MobiDBLite consensus disorder prediction 1 31 - -
Rops2g04577 393 SUPERFAMILY NAC domain 43 189 IPR036093 GO:0003677|GO:0006355
Rops2g04577 393 Pfam No apical meristem (NAM) protein 45 169 IPR003441 GO:0003677|GO:0006355
Rops2g04577 393 ProSiteProfiles NAC domain profile. 43 190 IPR003441 GO:0003677|GO:0006355
Rops2g04577 393 MobiDBLite consensus disorder prediction 196 218 - -
Rops2g04577 393 MobiDBLite consensus disorder prediction 1 44 - -
Rops2g04577 393 Gene3D NAC domain 52 193 IPR036093 GO:0003677|GO:0006355
Rops2g04577 393 FunFam NAC domain-containing protein 35 52 193 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g04577 Rops-Chr2 83627072 83629117 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g04577 1 393 NAC Transcription Factor Family AT2G02450 47.964 2.38e-116 343
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Rops2g04577 NAM 5.8e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g04577 - - gmx:100812779 557.755