Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g04573 ATGTCTGAAATGCGTGTGTCTGATCCAAGCAAGCTCCACTTGAAGAAGGAACTCACACAAATTCGTAAGGCTGCACGTGTATTGAGGGATCCTGGCACAACATCTTCGTGGAAATCACCACTTAGTTCATCAAGATCTGTAGCTGCATGGAAGGAGAGTGGGCATAGTAGAAGGTTCGGTGGTAATGGAAATTCTCAACTTGATTCAGTGCACACTGGGAATGTTAACAACACCAACAATGAGAAAGAGAAAAGGGTGTTCTTGTGCAACTGGAAGAATTACAAATCTTCAAGTGAGAAGAGTGGTGGAGTAGCCAAATACAATGAGGAAGAAGATGGTGGATCTTCATCACTTCTTGGAAGTTTTGAAGATAGCTTCAGTGATGCTCGCAATGGTTGTGATTCAAAGAGTGATGGTGGGACTCGTTCTTCCATTTTCAGATGTGGAGATGCAAATCTTGTTTCCTTGGGCACACCAGCAGCTAGAAGAACAGTCCCAATTAAGAAAAAGAGTAAGAAAACAAGCCCTCATTTTGATTTTTTAACTAAATACCAGCAACATAGACAAACCAATCTAGGTAGAAAACTTGTGAGTTCCAACTCCAAGGCATTGCTAGATGGGCATCCTTCAATGCCTTTTTTTATTAGGGATGATTCAGTTGAACATTCTGATGATACTACTGAAGATTATTGTAATTCTGAGGATGTAAGAAGAGTTTCAGGGGCTTCTCCTTTGCTTATGAAACTCAAGCATAAGAATTGGTCTCGCTCTTCATCCAAGTTGTTGAGAAGAAGCCGAAAAGAGGACTCTTCTTATTCTTATAGTACCCCTGCATTGTCAACCAGTTCTTACAATAGGTATGGTCACCATTATCCAAGCACTGTTGGATCCTGGGATGGTACCACAACCTCAATCAATGATGGAGATGGTGATGATGAGATTGATGATCATTTGGATTTGCCTGGTCGACAAGGATGTGGAATTCCTTGCTATTGGTCAAAGAGGACACCTAAACATAGAGGGATGTGCGGGAGTTGTTATTCTCCTTCACTGTCAGACACTTTAAGGAGGAAAGGAAGCAGTATACTCTGCGGAAGTCAAAGTATTTATCCAAGACACCGGAGATCCTTTTCGGCCTCCCACAAGCGGAGAATTTCTTTGAGGAGTGCTCGAGGTGTTATTCCATTGCTCACTAACAGTGGCGATGTTAGAGAAGGGTCATCTATAGGAACAGGTAGGAGTGATGATGAACTTTCCACAAACTTTGGAGAGCTCGATCTTGAGGGCTTGAGCCGATTGGATGGAAGAAGGTGGTCATCAAGTTGTAGGAGTCAAGAGGGATTGGAGATTGTAGCTCTCAATGGGGAAGGGGAGGATGAAGGAACACCAGAAAATAGTAGGAGTTTCAGCCAGAAGTATAAGCCTATGGCCTTTAGTGAAGTGATTGGGCAGAACATTGTGGTTCAGTCACTTATCAATGCTGTTTCAAGGGGACGAATTGCTCCTGTCTATCTTTTTCAAGGTCCCCGTGGGACTGGTAAAACATCAACAGCTAGGATATTTGCTGCTGCCTTGAATTGTGTGGCTTCCAATGAGAGTAAGCCTTGTGGCTACTGTAGGGAATGTGCTGATTTCATTTCTGGCAAGAGCGGTGATCTACTGGAAGTTGATGGAACTAATAAGAAAGGAATTGATAAAGCTAGATATCTATTGAAAAGATTGTCAATTGGGTCATCATCAGCCTCCTCACGATTTACGGTGTTTGTTATTGATGAGTGTCACTTGTTACCCTCCAAGACATGGCTGGGATTTCTCAAGTTTCTGGAAGAACCACCCCAACGAGTTGTGTTCATATTTATAACATCTGATCTTGACAATGTGCCACGAACAATACAATCTCGATGCCAGAAGTACCTTTTTAATAAAATTAAAGATGGGGATATCGTGACCAGGTTAAGGAAAATATCTACTCAGGAGAACCTTGATGTTGAAACAGATGCACTGGACCTCATTGCTATGAATGCAGATGGGTCACTCCGAGATGCAGAAACAATGTTAGAACAGCTTAGTTTGCTGGGAAAAAGAATTACTACTTCTCTTGTCAATGAACTTGTGGGAGTTGTTTCAGACGAAAAGTTATTGGAACTTTTGGAGTTAGCAATGTCATCAGACACTGCAGAGACGGTGAAAAGAGCCAGAGAATTGATGGACTCTGGAGTTGATCCAATGGTTTTAATGTCTCAACTAGCTGGCCTTATTATGGACATCATTGCTGGATCATATACGATTGTTGATGCCAAACCCGATGATGCATTCATTGGTGGACGGAGTTTGAATGAATCAGAGTTGGAGAGGTTAAAGAATGCTTTGAAGCTTCTCTCAGAGGCTGAGAAACAGTTAAGGACATCCAGTGAACGCTCAACATGGTTCACAGCAACTCTGTTACAGCTTGGTTCTATACCTTCTCCAGATCTTACTCAGTCGGGCAGCAGCAGGAGGCAGAGCTGCAAGACAACTGAAGAAGATCCATCAAGTGCTTCAAGAGATGTTACTTCTTTCAAGCAAACATCCCTGCAAAAAGCAGTAAATGGTAGTTCCAGCCATCAAAAGGATATACCCTCAAAGATTGATGGTTTCGGCTTGAAATCAAAGCTCTCAAATAGCCCAGCCATAGACAATGGCTCCACAGTGGTCTCATCCGATGATCTTATGGTTGGGAATGCAATTTATAGATGCCTAGATTCAGGGAAGTTATGTGACATCTGGGCACGTTGTATTGGGAAGTGTCACTCTAAGACTTTGAGGCAGCTGCTACACAATCACGGAAAGCTTGTGTACATATGTGAAGTTGAAGGTGTTCTGGTAGCATATGTAGCATTTGAGGATGGAGATATTAAACTCAGGGCTGAAAGGTTTTTAAGAAGCATTACCAACTCAATGGAAATGGTTCTTAGATGCAATGTGGAGGTCAGAATTATCCACTTGCAAGATGGTGAAGGTGAAAATCAGGTCAATCTACAGGATCTAAAGCAAGCAGAGTCGACAGTGGCAGGTGAGAAGGAGCAAAAACGAGGTCATGTGAAAGGAACTGAGTCTCATTCTAGTTTGCCTCCTCTACTGGATGGACACCTTCAATCTGCCACCAGTTCATCAGATATTCTGGCCGAAGGAAATGGTGTGAGGGAGAGGAGACGGGATAATCCAATGCAGAGAATTGAATCCATCATTCGTGAGCAGAGGCTGGAAACTGCCTGGTTACAGGCGGTTGAGAAAGGTTCCCCTGGATCATTGAGTCGTTTGAGACCTGAGAAGAATCAAGTCCTGCCACAGGATGGTATCTATGGTGTAGACCCAATGGAGTCCATGGATTCAACAAGATTTTCCTCTCATCAGCATTGGGAAGATGACCCCAATAACGATGTCAAAGTTTTGAGTGTTAAAAATGGAAGGGTCCTACAGAAGGATCAGATTGGTAAAAGGGCAGATCGTTATCCCATGTCCCCTAGTTTATTGCATGACAGCAGTTTAGCAACAATTTCCGGAAAAGATAATCTGGGATATGAATCAAGCTCAGGACCTGGAGGTTGTGGATTTTTGTGTTGGAATAACTCAAAGACTAGAAGGGTAATAAAGGTTAACGGCACCCCAGTTGGAGCACGTAAAGCTGGGCGTTTTACATTGTTCGGTGAATGTGGTAAGCCAAAGAAAAAGGAGTGGAGAAGATAA 3726 0.4291 MSEMRVSDPSKLHLKKELTQIRKAARVLRDPGTTSSWKSPLSSSRSVAAWKESGHSRRFGGNGNSQLDSVHTGNVNNTNNEKEKRVFLCNWKNYKSSSEKSGGVAKYNEEEDGGSSSLLGSFEDSFSDARNGCDSKSDGGTRSSIFRCGDANLVSLGTPAARRTVPIKKKSKKTSPHFDFLTKYQQHRQTNLGRKLVSSNSKALLDGHPSMPFFIRDDSVEHSDDTTEDYCNSEDVRRVSGASPLLMKLKHKNWSRSSSKLLRRSRKEDSSYSYSTPALSTSSYNRYGHHYPSTVGSWDGTTTSINDGDGDDEIDDHLDLPGRQGCGIPCYWSKRTPKHRGMCGSCYSPSLSDTLRRKGSSILCGSQSIYPRHRRSFSASHKRRISLRSARGVIPLLTNSGDVREGSSIGTGRSDDELSTNFGELDLEGLSRLDGRRWSSSCRSQEGLEIVALNGEGEDEGTPENSRSFSQKYKPMAFSEVIGQNIVVQSLINAVSRGRIAPVYLFQGPRGTGKTSTARIFAAALNCVASNESKPCGYCRECADFISGKSGDLLEVDGTNKKGIDKARYLLKRLSIGSSSASSRFTVFVIDECHLLPSKTWLGFLKFLEEPPQRVVFIFITSDLDNVPRTIQSRCQKYLFNKIKDGDIVTRLRKISTQENLDVETDALDLIAMNADGSLRDAETMLEQLSLLGKRITTSLVNELVGVVSDEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLAGLIMDIIAGSYTIVDAKPDDAFIGGRSLNESELERLKNALKLLSEAEKQLRTSSERSTWFTATLLQLGSIPSPDLTQSGSSRRQSCKTTEEDPSSASRDVTSFKQTSLQKAVNGSSSHQKDIPSKIDGFGLKSKLSNSPAIDNGSTVVSSDDLMVGNAIYRCLDSGKLCDIWARCIGKCHSKTLRQLLHNHGKLVYICEVEGVLVAYVAFEDGDIKLRAERFLRSITNSMEMVLRCNVEVRIIHLQDGEGENQVNLQDLKQAESTVAGEKEQKRGHVKGTESHSSLPPLLDGHLQSATSSSDILAEGNGVRERRRDNPMQRIESIIREQRLETAWLQAVEKGSPGSLSRLRPEKNQVLPQDGIYGVDPMESMDSTRFSSHQHWEDDPNNDVKVLSVKNGRVLQKDQIGKRADRYPMSPSLLHDSSLATISGKDNLGYESSSGPGGCGFLCWNNSKTRRVIKVNGTPVGARKAGRFTLFGECGKPKKKEWRR* 1242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g04573 1241 CDD HLD_clamp_pol_III_gamma_tau 643 706 IPR045085 -
Rops2g04573 1241 MobiDBLite consensus disorder prediction 1014 1030 - -
Rops2g04573 1241 MobiDBLite consensus disorder prediction 32 50 - -
Rops2g04573 1241 MobiDBLite consensus disorder prediction 821 852 - -
Rops2g04573 1241 Gene3D - 460 641 IPR027417 -
Rops2g04573 1241 FunFam DNA polymerase III subunit gamma/tau 644 706 - -
Rops2g04573 1241 MobiDBLite consensus disorder prediction 1039 1055 - -
Rops2g04573 1241 Coils Coil 776 806 - -
Rops2g04573 1241 MobiDBLite consensus disorder prediction 1012 1067 - -
Rops2g04573 1241 Gene3D - 645 706 - -
Rops2g04573 1241 MobiDBLite consensus disorder prediction 96 120 - -
Rops2g04573 1241 Pfam DNA polymerase III, delta subunit 483 643 - -
Rops2g04573 1241 CDD AAA 482 640 - -
Rops2g04573 1241 MobiDBLite consensus disorder prediction 27 78 - -
Rops2g04573 1241 Pfam DNA polymerase III subunits gamma and tau domain III 697 818 IPR022754 GO:0003887
Rops2g04573 1241 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 470 886 - -
Rops2g04573 1241 FunFam DNA polymerase III subunit gamma/tau 464 642 - -
Rops2g04573 1241 SMART AAA_5 500 650 IPR003593 GO:0016887
Rops2g04573 1241 Gene3D - 707 821 - -
Rops2g04573 1241 SUPERFAMILY post-AAA+ oligomerization domain-like 714 815 IPR008921 GO:0003677|GO:0006260
Rops2g04573 1241 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 492 690 IPR027417 -
Rops2g04573 1241 MobiDBLite consensus disorder prediction 58 78 - -
Rops2g04573 1241 NCBIfam DNA polymerase III subunit gamma/tau 468 817 IPR012763 GO:0003887|GO:0005524|GO:0006260|GO:0009360
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g04573 Rops-Chr2 83569074 83575870 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g04573 464 758 Core DNA Replication Machinery Family AT1G21690 25.000 8.52e-16 78.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g04573 - - gmx:100814391 1968.36