Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g04569 ATGGAACTTTCCAGCCAAGAAGGAGAAATCCCAATCCCAATAAACAGTACTTATGGTGGGGGACATGGGAATGGTCATGGACAGGGACATGGTCACATGATTCATGATGACCCTCCTCCACACCATAACCACATTATATCTTCCTCAACACCCCAAAACCCTTCAAATGGCTCTTCAATGCAAGCAGGCCTAGAGGATCATGGACATGGACCCTACAAGAAAGTGGTGAGGTACAGAGAATGCCTAAAGAACCATGCAGCTGCTATGGGAGGAAATGCCACTGATGGTTGTGGTGAGTTCATGCCAAGTGGTGAAGAAGGGACCATAGAGGCACTTAACTGCTCAGCCTGCCATTGTCACAGAAACTTCCACAGAAAAGAAGTTGAAGGTGAACCCTCCCCATGTGACTACCACCATACTAGCTCACATTTCAACAGGCTTGGGAGGAAATTCCTTTTAGGCCATCATAAGAACATCCTTCCTCCTGAGGCTTTGGGTTACCCTACAGGTAACATTTTACCTTCTAGAACTGTTCCACCCCACCAGATGATAATGCCCTACAACATAGGACCCCTTCCTTCAGAATCTGATGAGCAAGAAGAAGCTGGTGGTGGAGGCAGCATTGGTGGTGGAATGGTGGCTAGACCTACTCAGCTTGTGAAGAAAAGGTTCAGGACAAAGTTCACTCCGGATCAGAAGGAGAAAATGCTCAGCTTTGCTGAGAAGGTTGGGTGGAAAATTCAGAAGCAAGAGGAATCTGTAGTGCAACAATTCTGCCAAGAGATTGGGGTCAAAAGGAGAGTGCTCAAGGTTTGGATGCATAACAACAAGCACAATCTAGCCAAAAAGGATCTCCTCCCAACTGCTTAA 870 0.4678 MELSSQEGEIPIPINSTYGGGHGNGHGQGHGHMIHDDPPPHHNHIISSSTPQNPSNGSSMQAGLEDHGHGPYKKVVRYRECLKNHAAAMGGNATDGCGEFMPSGEEGTIEALNCSACHCHRNFHRKEVEGEPSPCDYHHTSSHFNRLGRKFLLGHHKNILPPEALGYPTGNILPSRTVPPHQMIMPYNIGPLPSESDEQEEAGGGGSIGGGMVARPTQLVKKRFRTKFTPDQKEKMLSFAEKVGWKIQKQEESVVQQFCQEIGVKRRVLKVWMHNNKHNLAKKDLLPTA* 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g04569 289 MobiDBLite consensus disorder prediction 1 69 - -
Rops2g04569 289 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 77 128 IPR006456 -
Rops2g04569 289 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 78 127 IPR006456 -
Rops2g04569 289 MobiDBLite consensus disorder prediction 193 215 - -
Rops2g04569 289 SUPERFAMILY Homeodomain-like 220 282 IPR009057 -
Rops2g04569 289 NCBIfam homeobox domain, ZF-HD class 221 277 IPR006455 -
Rops2g04569 289 MobiDBLite consensus disorder prediction 43 62 - -
Rops2g04569 289 Pfam ZF-HD protein dimerisation region 76 128 IPR006456 -
Rops2g04569 289 Gene3D - 213 283 - -
Rops2g04569 289 FunFam Zinc-finger homeodomain protein 2 211 282 - -
Rops2g04569 289 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 53 280 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g04569 Rops-Chr2 83516676 83519056 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g04569 1 284 ZF-HD Transcription Factor Family AT1G14440 48.684 2.91e-81 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Rops2g04569 ZF-HD_dimer 1.5e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g04569 - - vvi:100247287 431.795