Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g04562 ATGGCTACATCCATGGTGGAGCCCTACAAACTTCCCATGGCAACGATACCCAAATCCAAAGTTGAAACAAGCACGACCTTATCAATTGATCGAAAGAAAAAAAAGTTGAACTCAGAGTTATCCTACATTCTCTGCTTTCTTGGAGCTTCTTTCTGTGATTCTCTCATGGCATTTATGGATTCAAATCACAAATCTGGTGGAATTCATGCAGGGGCAATCAATGATGATTTATACAAGGAATTGTGGAATGCCTGTGCTGGTCCCCTTGTTACTCTTCCTCGTGAAGGGGAGCGAGTTTATTACTTTCCACAAGGTCACATGGAACAGCTCGAGGCCTCTATGTGTCAGGGACTAGAGCAGCAAATGCCTTCCTTCAACCTGCCTTCTAAAATATTATGTAAAGTGGTCAATGTTCATCTTCGGGCTGAACCTGAAACAGATGAAGTGTATGCACAGATAACTTTACTTCCTGAAGCAGATCAAAGCGAGGTGACAAGCCCTGACGATCCTCTGCCAGATTCTCCAAGGTTCAAGGTTCATTCATTTTGCAAAACACTTACCGCTTCTGACACCAGCACCCATGGAGGTTTCTCTGTTCTTCGAAGACATGCAGATGATTGTCTGCCACCACTGGATATGACTCAGCAGCCACCATGGCAAGAATTGGTTGCAACTGATTTACATGGGATTGAATGGCATTTTAGACATATTTTTCGAGGGCAACCCAGGCGCCACTTGCTTACCACTGGGTGGAGTGTTTTTGTCAGCTCCAAAAAATTAGTGGCTGGTGATGCCTTTATATTCTTAAGGGGTGAAAATGGAGAGCTGCGAGTTGGAGTTAGGAGGCTCATGAGACAGCAAAGCAATGTGCCTTCTTCTGTTATATCCAGTCACAGTATGCATCTTGGTGTTCTGGCCACTGCCTCTCATGCCATTGCCACTGGAACACTGTTTTCTATCTTTTACAAACCCAGAACGAGCCGGTCTGAGTTTATTGTGTGCGTCAACAAGTATTTGGAAGCTCGGAGTCATAAACTCTCTGTTGGGATGAGATTCAAAATGAGATTTGAGGGTGATGAAGTTCCAGAAAGAAGGTTCAGTGGCACAATTGTGGGTGTTGAAGATAATAAATCATCAGTTTGGGTTGATTCTGAGTGGCGATCATTAAAGGTGCAATGGGATGAACCATCATCAATTTTGCGTCCTGATAGAGTTTCTTCATGGGAATTGGAGCCTCTTGTGTCTACCACTCCTGCAAACACTCAGCCAACCCAAAGAAACAAGAGGGCACGGCCCCTCATTCTACCTTCTGCGATGCCTGACTCTTCTGTGCAAGGCATATGGAAATCATCAGTTGATTCTACCTCTTTATCTTATTGTGACCCCCAACATGGACGAGGCATCTATGCATCACCCAAGTTCAATTCTACTGCAACTAACTTTCTTGGCTTTGGTGGGAATAGCTCTCTGGGATCTCCTTCCAACAAATCCATATATTGGTCTAATGGGATGGGAAACTCTATGGAACCTTTTTCAGATATAGCTGTTAAAGAATCTGGAGAGAAGAGACAAGGCAATGGAAATGGCTGTAGACTCTTTGGGATTCAGTTACTTGAGAATTCTAATGCAGAAGGAAGTCTACAAACAATCACTTTGTCAGGAAGGGTGGGTGATGATAGGTCTGTTCCATCTTTAGATGCGGCGTCTGATCAGCATTCTGAACCATCGAATGCTAATCGATCTGATATTCCTTCAGCAAGTTGTGATGCTGAAAAATCATGCCTGCAGTCTCCCCAGGAGTCGCAAAGCAAGCAAATAAGGAGCTGTACAAAGGTTCACATGCAAGGAATGGCTGTTGGGAGGGCTGTTGATTTAACACGATTTGATGGGTATGAGGATCTGCTTAGGAAATTGGAAGAGATATTTGATATCAAGGCTGAGCTCTGTGGATCCCAAAAAAAATGGCAGGTTGTCTACACTGATGATGAGGATGATATGATGATGGTTGGAGATGATCCATGGCACGAGTTCTGCACTGTTGTGAGGAAAATTTTCATCTACACAGCAGAGGAGGTGAAGAAGCTTTCGCCCAAAATAGGACTTCCAATCAATGAAAAGGTTAAAGCGAAAAAGCTGGATTCTGAAGCAATAGTTAATCCTGAAGACCAGTCATCTACTATTGGGTCTGGTTGCTAG 2196 0.4381 MATSMVEPYKLPMATIPKSKVETSTTLSIDRKKKKLNSELSYILCFLGASFCDSLMAFMDSNHKSGGIHAGAINDDLYKELWNACAGPLVTLPREGERVYYFPQGHMEQLEASMCQGLEQQMPSFNLPSKILCKVVNVHLRAEPETDEVYAQITLLPEADQSEVTSPDDPLPDSPRFKVHSFCKTLTASDTSTHGGFSVLRRHADDCLPPLDMTQQPPWQELVATDLHGIEWHFRHIFRGQPRRHLLTTGWSVFVSSKKLVAGDAFIFLRGENGELRVGVRRLMRQQSNVPSSVISSHSMHLGVLATASHAIATGTLFSIFYKPRTSRSEFIVCVNKYLEARSHKLSVGMRFKMRFEGDEVPERRFSGTIVGVEDNKSSVWVDSEWRSLKVQWDEPSSILRPDRVSSWELEPLVSTTPANTQPTQRNKRARPLILPSAMPDSSVQGIWKSSVDSTSLSYCDPQHGRGIYASPKFNSTATNFLGFGGNSSLGSPSNKSIYWSNGMGNSMEPFSDIAVKESGEKRQGNGNGCRLFGIQLLENSNAEGSLQTITLSGRVGDDRSVPSLDAASDQHSEPSNANRSDIPSASCDAEKSCLQSPQESQSKQIRSCTKVHMQGMAVGRAVDLTRFDGYEDLLRKLEEIFDIKAELCGSQKKWQVVYTDDEDDMMMVGDDPWHEFCTVVRKIFIYTAEEVKKLSPKIGLPINEKVKAKKLDSEAIVNPEDQSSTIGSGC* 732
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g04562 731 Gene3D - 345 418 - -
Rops2g04562 731 ProSiteProfiles PB1 domain profile. 607 700 IPR000270 GO:0005515
Rops2g04562 731 Pfam B3 DNA binding domain 182 282 IPR003340 GO:0003677
Rops2g04562 731 MobiDBLite consensus disorder prediction 561 600 - -
Rops2g04562 731 FunFam Auxin response factor 345 417 - -
Rops2g04562 731 SMART B3_2 182 284 IPR003340 GO:0003677
Rops2g04562 731 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 76 696 IPR044835 GO:0003677|GO:0006355|GO:0009725
Rops2g04562 731 Pfam AUX/IAA family 599 697 IPR033389 -
Rops2g04562 731 SUPERFAMILY DNA-binding pseudobarrel domain 178 311 IPR015300 -
Rops2g04562 731 Gene3D - 179 284 IPR015300 -
Rops2g04562 731 FunFam Auxin response factor 602 696 - -
Rops2g04562 731 Gene3D - 602 696 - -
Rops2g04562 731 CDD B3_DNA 180 282 IPR003340 GO:0003677
Rops2g04562 731 Pfam Auxin response factor 308 390 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Rops2g04562 731 ProSiteProfiles B3 DNA-binding domain profile. 182 284 IPR003340 GO:0003677
Rops2g04562 731 MobiDBLite consensus disorder prediction 566 600 - -
Rops2g04562 731 FunFam Auxin response factor 180 284 - -
Rops2g04562 731 SUPERFAMILY CAD & PB1 domains 609 684 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g04562 Rops-Chr2 83386822 83397473 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g04562 61 728 B3 DNA Binding Superfamily AT1G59750 69.851 0.0 932
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Rops2g04562 B3 7e-19 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g04562 K14486 - gmx:100815450 1201.81