Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g04558 ATGTCAGGAGAACCAGAAGAGAAGCAGAGAATTAATGTTGATGATTGTTTTGGATCAAACCTTATGGATCATGAAAGGGACCTTGAGACAGAAGGGGTGGTGTTGATGGGGAACAATGGCAGACAGGAAAGGACAGAGAAGGGCATGTATGGATCAGGATCAGGATCAGGATCAGGATCAGGAGAGAGGCTGAGAGAGCCTCTTCTTTTGAGGAATAACAAGATGAACACTACTTCCCAACTTGCCATTGTTGGAGCCAATGTTTGTTCTATTGAAAGTCTTGACTATGAGATCTTTGAGAATGATATTTTCAAGCAGGATTGGAGGTCTAGATCAAAGGCTGAGATAGGCCAATATGTTACCCTAAAATGGACCCTTGCACTTCTTATTGGTTTAGGCACAGGGCTTGTTGCCTTCTTCAATAACATTGGAGTTGAGAATATTGCTGGTTTCAAGCTTCTATTCACCAACAATCTCATGCTCAACCAAAAGTACAATCAGGCCTTTGCAGTATATGTTGGTTGTAACATGGTTTTAGCCATTGCTGCTGCAGCCCTATGTGCTTTCATTGCCCCTGCAGCAGCAGGGTCAGGGATACCTGAGGTGAAGTCATACCTCAATGGTGTAGATGCTCCTTCTATATTGGCTCCAAGTACCCTCTTTGTAAAGATTTTTGGTTCAATTTTTGGGGTGGCAGCCGGTTTTGTTGTGGGTAAGGAAGGACCTATGGTACATACTGGTGCTTGCATAGCTAGTTTACTTGGACAAGGTGGTTCTCAAAAATGTGGACTGACATGGAAGTGGCTCAGACATTTCAAAAATGACCGAGATAGAAGGGATATGATCACCTGTGGTGCAGCTGCTGGTGTTGCTGGTGCTTTCCGTGCCCCAGTTGGTGGTGTCCTTTTTGCACTTGAAGAAGCAGCTTCCTGGTGGAGGAGTGCTCTTTTGTGGAGGACTTTTTTTACGGCAGCTGTAGTAGCTGTAGTGCTTAGAGGTTTCATAGAGTTTTGCCGGGGTGGAAAATGTGGTCTTTTTGGGGAAGGAGGTTTGATAATGTTTGATGTCAATTCAGGAAAGCCTGCATACAGCATACCTGACCTCCTTGTAGTTATATTTCTTGGAGTTATTGGAGGTCTTTTGGGAAGCCTTTACAATTATCTTGTGGATAAGGTCCTTCGCACTTATAGCATCATAAATGAGAGAGGCCCTAAATTTAAAATTCTCCTTGTCATGATTATCTCCTTTTTAACCTCTTGCTGTTCATTTGGCCTTCCATGGCTATCAAAGTGCATCCCTTGTCCTTCTCACGCGGGGGATCAGTGTCCAACTGTAGGGCACTCTGGACACTACAAGAATTTTCAATGTCCACCAAACCACTACAATGACCTTGCCTCTCTCTTTTTTACTACCAATGATGATGCTATTCGTAACCTTTTTGTTGCTGGCTCTGATAAAAGATTTCTACTCTCTAGTCTTCTAATCTTCTTTGTGGCCATATACTTTCTTGGAATCATAACTTATGGCATTGCCATTCCCTCTGGATTATTCATTCCTGTCATACTTGCTGGAGCTTCATATGGTCGTGTTGCAGGAAGTCTCTTGAGTCCATTCAGTGTTCTTGATGTTGGTTTGTTTGCACTCCTTGGTGCTGCTTCATTCCTTGGTGGAACCATGAGAATGACTGTTTCTCTTTGTGTCATACTTCTTGAACTCACTAATAACCTTCTCATGCTCCCATTGGTGATGTTGGTTCTCCTTATTTCAAAGTCAGTGGCTGATTGTTTTAACAAAGGTGTTTATGATCAGATTGTGGAAATGAAGGGGTTACCTTATATGGATGCACATCCTGAACCATACATGAGGCAGTTAGTTGCAAGTGATGTTGTTTCTGGTCCCTTGTTTACATTTTCTGGGATTGAAAAAGTGGGGAATATTGTGCATACTTTAAGGGTCACAGGACATAATGGTTTTCCTGTGATTGATGAGCCTCCTTTCTCAGATGCTCCTGAGTTGTGTGGGTTGGTTTTGAGGTCTCATCTGCTTGTACTTCTTAAACATAGGACATTTACAAAGGAAAGGGGTATGAGTGGTTCCTCTATTATGAAGAAGTTTAAGGCACATGATTTTGCAAAGCCAGGTTCAGGCAAAGGGATCAAGCTTGATGCTTTAGACATTTCTGAGGATGAGATGGAAATGTATGTTGATCTGCATCCTATAACTAATAGGTCACCATATACAGTAGTGGAAACAATGTCTCTAGCTAAAGCTGCTACTCTTTTCCGCGAGCTTGGCCTCAGGCACTTGTTGGTGGTTCCAAAGACATCAGGGAGGCATCCAGTTGTTGGGATCCTGACAAGGCATGATTTCATGCCTGAGCATATATTGGGACTATACCCTCACTGCAACAACACATACAAATAG 2424 0.4282 MSGEPEEKQRINVDDCFGSNLMDHERDLETEGVVLMGNNGRQERTEKGMYGSGSGSGSGSGERLREPLLLRNNKMNTTSQLAIVGANVCSIESLDYEIFENDIFKQDWRSRSKAEIGQYVTLKWTLALLIGLGTGLVAFFNNIGVENIAGFKLLFTNNLMLNQKYNQAFAVYVGCNMVLAIAAAALCAFIAPAAAGSGIPEVKSYLNGVDAPSILAPSTLFVKIFGSIFGVAAGFVVGKEGPMVHTGACIASLLGQGGSQKCGLTWKWLRHFKNDRDRRDMITCGAAAGVAGAFRAPVGGVLFALEEAASWWRSALLWRTFFTAAVVAVVLRGFIEFCRGGKCGLFGEGGLIMFDVNSGKPAYSIPDLLVVIFLGVIGGLLGSLYNYLVDKVLRTYSIINERGPKFKILLVMIISFLTSCCSFGLPWLSKCIPCPSHAGDQCPTVGHSGHYKNFQCPPNHYNDLASLFFTTNDDAIRNLFVAGSDKRFLLSSLLIFFVAIYFLGIITYGIAIPSGLFIPVILAGASYGRVAGSLLSPFSVLDVGLFALLGAASFLGGTMRMTVSLCVILLELTNNLLMLPLVMLVLLISKSVADCFNKGVYDQIVEMKGLPYMDAHPEPYMRQLVASDVVSGPLFTFSGIEKVGNIVHTLRVTGHNGFPVIDEPPFSDAPELCGLVLRSHLLVLLKHRTFTKERGMSGSSIMKKFKAHDFAKPGSGKGIKLDALDISEDEMEMYVDLHPITNRSPYTVVETMSLAKAATLFRELGLRHLLVVPKTSGRHPVVGILTRHDFMPEHILGLYPHCNNTYK* 808
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g04558 807 Pfam CBS domain 742 790 IPR000644 -
Rops2g04558 807 Pfam Voltage gated chloride channel 180 594 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Rops2g04558 807 ProSiteProfiles CBS domain profile. 741 805 IPR000644 -
Rops2g04558 807 CDD CBS_pair_voltage-gated_CLC_euk_bac 626 793 - -
Rops2g04558 807 SMART cbs_1 744 795 IPR000644 -
Rops2g04558 807 SMART cbs_1 633 686 IPR000644 -
Rops2g04558 807 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 71 796 - -
Rops2g04558 807 Gene3D - 614 792 IPR046342 -
Rops2g04558 807 SUPERFAMILY CBS-domain pair 616 791 IPR046342 -
Rops2g04558 807 Gene3D Clc chloride channel 116 613 - -
Rops2g04558 807 SUPERFAMILY Clc chloride channel 101 616 IPR014743 -
Rops2g04558 807 FunFam Chloride channel ClC3 115 430 - -
Rops2g04558 807 PRINTS Plant CLC chloride channel signature 464 480 IPR002251 GO:0005247|GO:0006821|GO:0016020
Rops2g04558 807 PRINTS Plant CLC chloride channel signature 340 347 IPR002251 GO:0005247|GO:0006821|GO:0016020
Rops2g04558 807 PRINTS Plant CLC chloride channel signature 308 316 IPR002251 GO:0005247|GO:0006821|GO:0016020
Rops2g04558 807 PRINTS Plant CLC chloride channel signature 97 105 IPR002251 GO:0005247|GO:0006821|GO:0016020
Rops2g04558 807 PRINTS Plant CLC chloride channel signature 322 332 IPR002251 GO:0005247|GO:0006821|GO:0016020
Rops2g04558 807 MobiDBLite consensus disorder prediction 41 63 - -
Rops2g04558 807 CDD ClC_6_like 92 613 - -
Rops2g04558 807 PRINTS Chloride channel signature 223 242 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Rops2g04558 807 PRINTS Chloride channel signature 192 209 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Rops2g04558 807 PRINTS Chloride channel signature 287 306 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Rops2g04558 807 PRINTS Chloride channel signature 600 614 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Rops2g04558 807 PRINTS Chloride channel signature 562 581 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Rops2g04558 807 PRINTS Chloride channel signature 544 560 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Rops2g04558 807 PRINTS Chloride channel signature 512 532 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g04558 Rops-Chr2 83346723 83352971 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g04558 23 803 Ion Channels AT5G49890 75.320 0.0 1143
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g04558 K05016 - cave:132178584 1154.43